BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF07FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1563 1122 0.0
>3x_Contig1563
Length = 10839
Score = 1122 bits (566), Expect = 0.0
Identities = 640/662 (96%), Gaps = 2/662 (0%)
Strand = Plus / Plus
Query: 87 tgaggtagttttcatagaaccatactatcagttctacaaaatcagttacaaaatcattca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358 tgaggtagttttcatagaaccatactatcagttctacaaaatcagttacaaaatcattca 1417
Query: 147 aataataggtaacatcagttggatccaacggtttagtttcaccgtggcctctagcatcaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1418 aataataggtaacatcagttggatccaacggtttagtttcaccgtggcctctagcatcaa 1477
Query: 207 atgaaaagaagccaaaattcgttccgagatcttcttttagggttttcgccaaaggtgcga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1478 atgaaaagaagccaaaattcgttccgagatcttcttttagggttttcgccaaaggtgcga 1537
Query: 267 aagttagcccagtagaaccagcaccatgatgagccagaaatattgggattgatgacaggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1538 aagttagcccagtagaaccagcaccatgatgagccagaaatattgggattgatgacaggt 1597
Query: 327 ctgaactgttgacctctggaacctggaagtatgtattgaacgtgaaatttctattaggta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1598 ctgaactgttgacctctggaacctggaagtatgtattgaacgtgaaatttctattaggta 1657
Query: 387 gactgacagtctcgttcttggcaaaaaactcagtccatctagggaaccctgtatcctcca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1658 gactgacagtctcgttcttggcaaaaaactcagtccatctagggaaccctgtatcctcca 1717
Query: 447 tattctcagctttcgtttcacttgaaacacctaacccagggttcttaacgacaggcaatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1718 tattctcagctttcgtttcacttgaaacacctaacccagggttcttaacgacaggcaatt 1777
Query: 507 ctgtaatcgtatcttcttctccatttccttcaggtgccgtatcgaaggcattgatcatct 566
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1778 ctgtaatcgtatcttcttctccatttccttcaggtgccgtatcgaaggcatggatcatct 1837
Query: 567 ttccagcattttcgattttc-ttaataacgctttcctttgaagattaccaga-attatta 624
||||||||||||||| || | |||||||||||| |||||||||||||||||| || ||||
Sbjct: 1838 ttccagcattttcgaattcctttaataacgcttccctttgaagattaccagacataatta 1897
Query: 625 tatatctctggtcttttttggatgaatttaataagccactatttgaagaatttagttcat 684
|||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 1898 tatatctctgttcttttttgattgtatttaataagccactatttgaagaatttagttcat 1957
Query: 685 atgacgtccactttgccagcctgatttgaaattggagcaatttaaacaattggattatgg 744
||||||| |||| ||| | |||||| | || | |||||||||||||||||||| ||||
Sbjct: 1958 atgacgtacactatgcgaagctgattgaagatggcagcaatttaaacaattggataatgg 2017
Query: 745 at 746
||
Sbjct: 2018 at 2019
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6845
Number of Sequences: 1807
Number of extensions: 6845
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)