BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZF07RM1.SCF screened BAC_end
         (933 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig790                                                         1015   0.0  

>3x_Contig790 
          Length = 4570

 Score = 1015 bits (512), Expect = 0.0
 Identities = 555/564 (98%), Gaps = 4/564 (0%)
 Strand = Plus / Plus

                                                                       
Query: 46  cttatgtcaatgaaaacatatttaacaatgggatactacttactagtggagaggttaagg 105
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cttatgtcaatgaaaacatatttaacaatgggatactacttactagtggagaggttaagg 427

                                                                       
Query: 106 atagacatttaaaaaccctgagagatctaccaccatttggtgacttggtcttaaaagtta 165
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atagacatttaaaaaccctgagagatctaccaccatttggtgacttggtcttaaaagtta 487

                                                                       
Query: 166 ccacaagtgagggacaagattatttttatatgtgtcataaatctatcttggtgagatcca 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccacaagtgagggacaagattatttttatatgtgtcataaatctatcttggtgagatcca 547

                                                                       
Query: 226 atttcttcaaattgatgttttcctcatctttccaagaagccacttcagaggttccaattg 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atttcttcaaattgatgttttcctcatctttccaagaagccacttcagaggttccaattg 607

                                                                       
Query: 286 tttcgttatcggtggttaatttatctgtggccgaagttgttctttcctatttatattatg 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tttcgttatcggtggttaatttatctgtggccgaagttgttctttcctatttatattatg 667

                                                                       
Query: 346 attcaacagatataccctgggagattgccattgnatgtattacgaaccagcgatttcatt 405
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 668 attcaacagatataccctgggagattgccattg-atgtattacgaaccagcgatttcatt 726

                                                                       
Query: 406 ttaacggatagattgaaaacgatggcagcggtgaccataacccagagtaaggaattttta 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttaacggatagattgaaaacgatggcagcggtgaccataacccagagtaaggaattttta 786

                                                                       
Query: 466 acaaaatattcaatcttcgacgtcctcgatgtagcctggagctgctctgtggaacggtta 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 acaaaatattcaatcttcgacgtcctcgatgtagcctggagctgctctgtggaacggtta 846

                                                                       
Query: 526 gagcaccatgctgc-aaagtaatttgctacgacatcg-aaactatat-aatgattcactt 582
           |||||||||||||| |||||||||   |||||||||| ||||||||| ||||||||||||
Sbjct: 847 gagcaccatgctgcaaaagtaattgcttacgacatcgaaaactatataaatgattcactt 906

                                   
Query: 583 ttattcgacgccattattcaaagt 606
           ||||  ||||||||||||||||||
Sbjct: 907 ttatcggacgccattattcaaagt 930


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8748
Number of Sequences: 1807
Number of extensions: 8748
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)