BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF08FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig860 1154 0.0
>3x_Contig860
Length = 4193
Score = 1154 bits (582), Expect = 0.0
Identities = 668/690 (96%), Gaps = 5/690 (0%)
Strand = Plus / Minus
Query: 87 ttaggtagagtcatagatatcgtactttcctgtgactttggtcgtgagaacttcctgaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 ttaggtagagtcatagatatcgtactttcctgtgactttggtcgtgagaacttcctgaag 992
Query: 147 caagcaataatttcagaaattttgacatttactgatttgaacaactttacggaagtatct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 caagcaataatttcagaaattttgacatttactgatttgaacaactttacggaagtatct 932
Query: 207 aataaagtttctggtgtgtactgctctgaactgttgctaccgagtttgaaatacttcaag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 aataaagtttctggtgtgtactgctctgaactgttgctaccgagtttgaaatacttcaag 872
Query: 267 caggctgacgaagaggtgtttgacaacatctttgacgtattatctgagtttacaaaaagg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 caggctgacgaagaggtgtttgacaacatctttgacgtattatctgagtttacaaaaagg 812
Query: 327 tatttatttgaattcacaagggatttgcctgcagcgttgaaaacttttgtaggtttgcat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tatttatttgaattcacaagggatttgcctgcagcgttgaaaacttttgtaggtttgcat 752
Query: 387 aaaagttccctctccccagatttattggttttgcttttcacaaagtgcattacaacaggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aaaagttccctctccccagatttattggttttgcttttcacaaagtgcattacaacaggt 692
Query: 447 aaatgcgatgccgctactctggaaaccattttaaaaatgttgttagatattgatgtcaca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aaatgcgatgccgctactctggaaaccattttaaaaatgttgttagatattgatgtcaca 632
Query: 507 atatgcgcagatttgttggctacactcattgcctacagaaagattatttcacagacgttt 566
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 631 atatgcgcagatttgttggctacactcaatgcctacagaaagattatttcacagacgttt 572
Query: 567 ttagagtcattattcactttcgtatttgagtccagagattggataataatt-agaacatt 625
||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||
Sbjct: 571 ttagagtcattattcacttccgtatttgagtccagagattggaaaataattaagagcatt 512
Query: 626 attcgaattggacattgaaattggtatcttgaagaccggagaaataattgattgct-tgg 684
| ||||| |||||||||||||||||||||||||||| | |||| ||| ||| |||| |||
Sbjct: 511 a-tcgaaatggacattgaaattggtatcttgaagacggaagaattaa-tgaatgctatgg 454
Query: 685 acgcttcaaccactaattttgacctagaaatttggacctcaattttaaattgccatgtca 744
||||||| |||||||||||||| |||||||||||||| |||||| | ||||| |||||||
Sbjct: 453 acgcttcgaccactaattttgagctagaaatttggacttcaattatcaattgtcatgtca 394
Query: 745 atgcccgagaatttaacaattcttttgact 774
||||| |||||||| |||| ||||||||||
Sbjct: 393 atgccagagaattt-acaaatcttttgact 365
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,779
Number of Sequences: 1807
Number of extensions: 13779
Number of successful extensions: 129
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)