BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF08RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1331 1074 0.0
>3x_Contig1331
Length = 5830
Score = 1074 bits (542), Expect = 0.0
Identities = 639/660 (96%), Gaps = 9/660 (1%)
Strand = Plus / Plus
Query: 46 ctttgaggttggtagaagtctttaaagagtcattatacagcgaccgcaagaacccatatg 105
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 ctttgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatg 1943
Query: 106 aagatgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 aagatgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatg 2003
Query: 166 gtagatttaataaaagattaccgtatgatgctattgtaagaacgattagatcattatgtt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 2004 gtagatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtt 2063
Query: 226 tcactatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 tcactatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatc 2123
Query: 286 aaatagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagaca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 aaatagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagaca 2183
Query: 346 attctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 attctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaat 2243
Query: 406 aatacctgactatctgcataccactaatctgttttgatccaataatgcctttattcctta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 aatacctgactatctgcataccactaatctgttttgatccaataatgcctttattcctta 2303
Query: 466 ttttagttttaaacctagtttaacgacannattgtattactatatactaacgtttaagta 525
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2304 ttttagttttaaacctagtttaacgacaaatttgtattactatatactaacgtttaagta 2363
Query: 526 acttctaatgtgcctcttctcccagattagactg-acgatgcagaagttatcacagttct 584
|||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| |||
Sbjct: 2364 acttctaatgtgcctcttctcccaga-tagactgaacgatgcagaagtaatcacag-tct 2421
Query: 585 atctttcaaaaccaaaatt-atttgtcgaattc-aaatctatctattttgtgcattaaac 642
||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||
Sbjct: 2422 atctttcaaaaccaaaattaatttgtcgaattcaaaatctatctattttgtgca-taaac 2480
Query: 643 ctaac-tatgccatctactacttagtcctagggtaagtttaaattttttgtttacaactt 701
||| | |||||||||||||||||||| ||| |||||||||| | | ||||||||||||||
Sbjct: 2481 ctagcttatgccatctactacttagt-ctaaggtaagtttaca-tatttgtttacaactt 2538
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8235
Number of Sequences: 1807
Number of extensions: 8235
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)