BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF09FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 961 0.0
>3x_Contig1680
Length = 12597
Score = 961 bits (485), Expect = 0.0
Identities = 532/545 (97%), Gaps = 2/545 (0%)
Strand = Plus / Minus
Query: 86 ttcataatgcaaaccttgagcaatatctggagattgttgttcaatggcaaccaaaacgtt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5509 ttcataatgcaaaccttgagcaatatctggagattgttgttcaatggcaaccaaaacgtt 5450
Query: 146 acaggtcttgtagtcgaaacccttttcggaggaatcgtaaccaatttgcttgatggtgtc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5449 acaggtcttgtagtcgaaacccttttcggaggaatcgtaaccaatttgcttgatggtgtc 5390
Query: 206 acggacaatcttttggtagtccaggttggctctggtggtgatttcaccgaaaaccatgat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5389 acggacaatcttttggtagtccaggttggctctggtggtgatttcaccgaaaaccatgat 5330
Query: 266 cataccagtcttggctgcagtttcacatgcaaccttagacaatggatcttctctcaaaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5329 cataccagtcttggctgcagtttcacatgcaaccttagacaatggatcttctctcaaaca 5270
Query: 326 agcgtccaaaatagcatcggaaacttgatcacagatcttatctgggtgaccttcaccaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5269 agcgtccaaaatagcatcggaaacttgatcacagatcttatctgggtgaccttcaccaac 5210
Query: 386 agattcagaagtaaacaaaaaagtgttgttgttacccattgtgtatgttagaaacgaata 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5209 agattcagaagtaaacaaaaaagtgttgttgttacccattgtgtatgttagaaacgaata 5150
Query: 446 ttatagtatttgcgcttgcagttccaagtcaaaatgaacacacctcttatcatacaagat 505
||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 5149 ttagagtatttgcgcttgcagttccaagtcaaaatgaacacacctcttaacaaacaagat 5090
Query: 506 tatctacgataaagatcctttggagaatgatgtacaaatataaatgtccaaatatatatt 565
|||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 5089 aatctacgaaaaagatccttgggagaatgatgtacaaatataaatgtacaaatatatata 5030
Query: 566 tataaataattttagcctaaaatatacacatttattac-aacttgaacgtgt-aaccata 623
||||||||||| |||| ||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct: 5029 tataaataattatagcataaaatatacacaattattacaaacttgaacgtgtaaaccata 4970
Query: 624 aatat 628
|||||
Sbjct: 4969 aatat 4965
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7501
Number of Sequences: 1807
Number of extensions: 7501
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)