BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF10FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 914 0.0
>3x_Contig1766
Length = 23951
Score = 914 bits (461), Expect = 0.0
Identities = 486/493 (98%), Gaps = 1/493 (0%)
Strand = Plus / Plus
Query: 86 tatcactatctttgtcgttttttgcgtttcccttacgccaaatcatcatcttaaagagaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16494 tatcactatctttgtcgttttttgcgtttcccttacgccaaatcatcatcttaaagagaa 16553
Query: 146 accgttggtggctttgatatactacacatctttttactgatctgcagcatatatgagtga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16554 accgttggtggctttgatatactacacatctttttactgatctgcagcatatatgagtga 16613
Query: 206 caatccgtttgagtcttatctcgcacgagaccagcaaccgccacagcccgctgtcgatgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16614 caatccgtttgagtcttatctcgcacgagaccagcaaccgccacagcccgctgtcgatgt 16673
Query: 266 gctttcgcagcctaatgcctcactagaatattgcacggtgtcagtggaagatacgatagc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16674 gctttcgcagcctaatgcctcactagaatattgcacggtgtcagtggaagatacgatagc 16733
Query: 326 acaattaggaactgatttcgataatggtttatccaatccatcagaaattgcttataggaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16734 acaattaggaactgatttcgataatggtttatccaatccatcagaaattgcttataggaa 16793
Query: 386 atcaatttggggatcaaacgaagtcctacctgatgagaaagtatctctttggaaaaaatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16794 atcaatttggggatcaaacgaagtcctacctgatgagaaagtatctctttggaaaaaatt 16853
Query: 446 cttgtctacattcattgaagaccctttaattcttttgttgatcggatctgcagttatttt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 16854 cttgtctacattcattgaagaccctttaattcttttgttgatcggatctgcagttatatc 16913
Query: 506 tttctttatgggaaacatcgatgattcccttagtattgctctggcc-tcatcattgttgt 564
|||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct: 16914 tttcttaatgggaaacatcgatgattccatcagtattgctctggccatcatcattgttgt 16973
Query: 565 taccggcgggttt 577
||||| |||||||
Sbjct: 16974 taccgtcgggttt 16986
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7782
Number of Sequences: 1807
Number of extensions: 7782
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)