BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF10RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1120 0.0
>3x_Contig1720
Length = 19870
Score = 1120 bits (565), Expect = 0.0
Identities = 670/698 (95%), Gaps = 7/698 (1%)
Strand = Plus / Minus
Query: 45 gcttaaattgggaacgctattaaatttggatcgagcatttgcatatgccaaatttgcagt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2248 gcttaaattgggaacgctattaaatttggatcgagcatttgcatatgccaaatttgcagt 2189
Query: 105 gttttgatatgagcgataacttttaactcttggctgctgtatttctaagtgttccatgct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2188 gttttgatatgagcgataacttttaactcttggctgctgtatttctaagtgttccatgct 2129
Query: 165 gctattattgaagttcatattttcacttatgaaatgattcataccattattcatatgcat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2128 gctattattgaagttcatattttcacttatgaaatgattcataccattattcatatgcat 2069
Query: 225 gttcatagccataagtgactgatattctttaaaactctttggatggtttggagtaatggg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2068 gttcatagccataagtgactgatattctttaaaactctttggatggtttggagtaatggg 2009
Query: 285 ggttattacttgaggcatcgatgcccgggattcaaaaacgtgagaaacaatagcattgtc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2008 ggttattacttgaggcatcgatgcccgggattcaaaaacgtgagaaacaatagcattgtc 1949
Query: 345 acgctcaaacccgtccactgacctggcatgtttctttcgacctcctttctcatttatgaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1948 acgctcaaacccgtccactgacctggcatgtttctttcgacctcctttctcatttatgaa 1889
Query: 405 aaaagaattacggtcagatgtggagtaattggaatgctcgaatgcgttaccattctctgn 464
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1888 aaaagaattacggtcagatgtggagtaattggaatgctcgaatgcgttaccattctctgc 1829
Query: 465 cagatcgaaatcataccaatttggaattgaagaaacttttacatcttggactnctcgctc 524
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1828 aagatcgaaatcataccaatttggaattgaagaaacttttacatcttggactcctcgctc 1769
Query: 525 tttatgaatattctcatattcaggagaaaacttgatatacactttcacgggtttgtactg 584
|||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct: 1768 tttatgaatattctcatattcaggag-aaacttgatatacacttccacggg-ttgtactg 1711
Query: 585 aaatgaagctgattgacattttaccggaatgcatgctcaaaat-attgaattccaacttt 643
|||||| ||||||||||||||| ||||||||||||||||||| ||||||| | |||| |
Sbjct: 1710 aaatgaggctgattgacattttcacggaatgcatgctcaaaataattgaatccaaactct 1651
Query: 644 tccgtatttaaatttctgtcaattccctttctaatttttggaatggaacctgttctaaat 703
||||||||||||||||||||||||| | |||| |||| ||||| ||||||| ||| |||
Sbjct: 1650 tccgtatttaaatttctgtcaattcgc-ttctcatttctggaagtgaacctg-tctgaat 1593
Query: 704 tgctttaggaaacttttcaagtcctaaaacccctgaaa 741
||| | ||||| |||||||||||| ||||| |||||
Sbjct: 1592 tgcgtaaggaa--ctttcaagtcctagaacccttgaaa 1557
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9053
Number of Sequences: 1807
Number of extensions: 9053
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)