BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZF10RM1.SCF screened BAC_end (939 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1720 1120 0.0 >3x_Contig1720 Length = 19870 Score = 1120 bits (565), Expect = 0.0 Identities = 670/698 (95%), Gaps = 7/698 (1%) Strand = Plus / Minus Query: 45 gcttaaattgggaacgctattaaatttggatcgagcatttgcatatgccaaatttgcagt 104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2248 gcttaaattgggaacgctattaaatttggatcgagcatttgcatatgccaaatttgcagt 2189 Query: 105 gttttgatatgagcgataacttttaactcttggctgctgtatttctaagtgttccatgct 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2188 gttttgatatgagcgataacttttaactcttggctgctgtatttctaagtgttccatgct 2129 Query: 165 gctattattgaagttcatattttcacttatgaaatgattcataccattattcatatgcat 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2128 gctattattgaagttcatattttcacttatgaaatgattcataccattattcatatgcat 2069 Query: 225 gttcatagccataagtgactgatattctttaaaactctttggatggtttggagtaatggg 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2068 gttcatagccataagtgactgatattctttaaaactctttggatggtttggagtaatggg 2009 Query: 285 ggttattacttgaggcatcgatgcccgggattcaaaaacgtgagaaacaatagcattgtc 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2008 ggttattacttgaggcatcgatgcccgggattcaaaaacgtgagaaacaatagcattgtc 1949 Query: 345 acgctcaaacccgtccactgacctggcatgtttctttcgacctcctttctcatttatgaa 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1948 acgctcaaacccgtccactgacctggcatgtttctttcgacctcctttctcatttatgaa 1889 Query: 405 aaaagaattacggtcagatgtggagtaattggaatgctcgaatgcgttaccattctctgn 464 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1888 aaaagaattacggtcagatgtggagtaattggaatgctcgaatgcgttaccattctctgc 1829 Query: 465 cagatcgaaatcataccaatttggaattgaagaaacttttacatcttggactnctcgctc 524 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1828 aagatcgaaatcataccaatttggaattgaagaaacttttacatcttggactcctcgctc 1769 Query: 525 tttatgaatattctcatattcaggagaaaacttgatatacactttcacgggtttgtactg 584 |||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||| Sbjct: 1768 tttatgaatattctcatattcaggag-aaacttgatatacacttccacggg-ttgtactg 1711 Query: 585 aaatgaagctgattgacattttaccggaatgcatgctcaaaat-attgaattccaacttt 643 |||||| ||||||||||||||| ||||||||||||||||||| ||||||| | |||| | Sbjct: 1710 aaatgaggctgattgacattttcacggaatgcatgctcaaaataattgaatccaaactct 1651 Query: 644 tccgtatttaaatttctgtcaattccctttctaatttttggaatggaacctgttctaaat 703 ||||||||||||||||||||||||| | |||| |||| ||||| ||||||| ||| ||| Sbjct: 1650 tccgtatttaaatttctgtcaattcgc-ttctcatttctggaagtgaacctg-tctgaat 1593 Query: 704 tgctttaggaaacttttcaagtcctaaaacccctgaaa 741 ||| | ||||| |||||||||||| ||||| ||||| Sbjct: 1592 tgcgtaaggaa--ctttcaagtcctagaacccttgaaa 1557 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9053 Number of Sequences: 1807 Number of extensions: 9053 Number of successful extensions: 67 Number of sequences better than 1.0e-20: 1 length of query: 939 length of database: 10,358,551 effective HSP length: 16 effective length of query: 923 effective length of database: 10,329,639 effective search space: 9534256797 effective search space used: 9534256797 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)