BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF11RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 999 0.0
>3x_Contig1765
Length = 24733
Score = 999 bits (504), Expect = 0.0
Identities = 597/616 (96%), Gaps = 9/616 (1%)
Strand = Plus / Minus
Query: 50 tgaattctgttaatgttttcctttgaaatggcattccaacttctcatatatttagccaaa 109
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 17593 tgaattctgttaatgtaagcctttgaaatggcattccaacttctcatatatttagccaaa 17534
Query: 110 cattggtcgacgcagttatcttgagaagcagcatatggagcattcagacatttctcaaaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17533 cattggtcgacgcagttatcttgagaagcagcatatggagcattcagacatttctcaaaa 17474
Query: 170 cagttctcagtgactttgttaactaactcggtagcattggcgatggtttattcttgagag 229
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 17473 cagttctcagtgactttgttaactaactcggtagcattggcgatggctaattcttgagag 17414
Query: 230 atttgagatttaagttgggtcttgacatcgctaggactggatgtggctggggtaccagat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17413 atttgagatttaagttgggtcttgacatcgctaggactggatgtggctggggtaccagat 17354
Query: 290 gatgaagagctaccaccaaagatcgaagttaaagccatatcttaatgtgttctatgatag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17353 gatgaagagctaccaccaaagatcgaagttaaagccatatcttaatgtgttctatgatag 17294
Query: 350 attattgatccgatgcaatgttcagaggggcctggatgatagattatagctgttaattgt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17293 attattgatccgatgcaatgttcagaggggcctggatgatagattatagctgttaattgt 17234
Query: 410 agattgccaatggatatttcagtttatgctaaagcttcaaatcattagttttttttttca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17233 agattgccaatggatatttcagtttatgctaaagcttcaaatcattagttttttttttca 17174
Query: 470 atatgaggaagaaacattccttcacatcgagcagcaatgggaggggatagat-actattg 528
|||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||
Sbjct: 17173 atatgaggaagaaacattccttcacatcgagcagcaat-ggaagggatagataactattg 17115
Query: 529 tttcagcccgtttcacaacctctccttttctgcgatttaccgcgttattgg-agatatgt 587
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 17114 tttcagcccgtttcacaacctctcctttcctgcgatttaccgcgttattggaagatatgt 17055
Query: 588 ttgg-agttcccc-gagtgatttacttact-atatgaa-cactgttc-agtacttg-cac 641
|||| |||||||| |||||||||||||||| ||||||| |||||| | |||||||| |||
Sbjct: 17054 ttggaagttccccagagtgatttacttactaatatgaaccactgtccaagtacttgtcac 16995
Query: 642 acggagcttatttgta 657
||||||| ||| ||||
Sbjct: 16994 acggagcatatatgta 16979
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9476
Number of Sequences: 1807
Number of extensions: 9476
Number of successful extensions: 94
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)