BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZF12FM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1575 1195 0.0
>3x_Contig1575
Length = 11952
Score = 1195 bits (603), Expect = 0.0
Identities = 660/675 (97%), Gaps = 3/675 (0%)
Strand = Plus / Minus
Query: 86 tagctgtcctaccgtaaagtttgaaactggttttgccaacatagaaaacaatccatgccg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5962 tagctgtcctaccgtaaagtttgaaactggttttgccaacatagaaaacaatccaggccg 5903
Query: 146 gttctcattcccacgcatttcatagtacgcgtcagtataggtaaaatccaaaaaaaaaaa 205
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5902 gttctcagtcccacgcatttcatagtacgcgtcagtataggtaaaatccaaaaaaaaaaa 5843
Query: 206 aagttgaagatttcagattattagcatagaggccaaaatccaacaaaaattatactctat 265
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5842 aagttgaagatttcagaatattagcatagaggccaaaatccaacaaaaattatactctat 5783
Query: 266 actttgcgtaggcatattttgccatactgaaaaagttccattttttttttttttaatgtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5782 actttgcgtaggcatattttgccatactgaaaaagttccattttttttttttttaatgtt 5723
Query: 326 ttaccctaaccaactgattcttttcaaagaaaaaatcatattcaagtcccacagaaaaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5722 ttaccctaaccaactgattcttttcaaagaaaaaatcatattcaagtcccacagaaaaga 5663
Query: 386 gggtagggtaaatctgccatatccttcaatttagatggaattggcggctaaaagacgaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5662 gggtagggtaaatctgccatatccttcaatttagatggaattggcggctaaaagacgaat 5603
Query: 446 tccatgaaatatagagaaacagcaagaaataatgccatctaagctatattgtaaacctcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5602 tccatgaaatatagagaaacagcaagaaataatgccatctaagctatattgtaaacctcg 5543
Query: 506 tagataagtttgatagaaacgatcaatcagattggaaaggaggcaaagttagagggtttc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5542 tagataagtttgatagaaacgatcaatcagattggaaaggaggcaaagttagagggtttc 5483
Query: 566 ttatggaaggcggtctcttaattcctgtcacgtggcaataaatcccctttcgattcttca 625
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5482 ttagggaaggcggtctcttaattcctgtcacgtggcaataaattccctttcgattcttca 5423
Query: 626 tacaactgtgagttggtactctcttttctgaagtcctgcttcaaaagatactggtagttg 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5422 tacaactgtgagttggtactctcttttctgaagtcctgcttcaaaagatactggtagttt 5363
Query: 686 gttgacacatacctatctgagtttctactagcctagtttgggaaaagtttgggtttgggt 745
|||||||||||| |||||||||| ||||| |||||||||| ||||||| ||||| |||
Sbjct: 5362 gttgacacatacttatctgagttctaactag-ctagtttggg-aaagttttggttt-ggt 5306
Query: 746 ttgaccaccgacaat 760
||||||| |||||||
Sbjct: 5305 ttgaccagcgacaat 5291
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,260
Number of Sequences: 1807
Number of extensions: 23260
Number of successful extensions: 533
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)