BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZF12RM1.SCF screened BAC_end
         (953 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1652                                                        1302   0.0  

>3x_Contig1652 
          Length = 14842

 Score = 1302 bits (657), Expect = 0.0
 Identities = 847/896 (94%), Gaps = 12/896 (1%)
 Strand = Plus / Minus

                                                                         
Query: 46    cttcttgagtctttccttcctttcttcagctttcttggatctcttcttttcatccttcgc 105
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12562 cttcttgagtctttccttcctttcttcagctttcttggatctcttcttttcatccttcgc 12503

                                                                         
Query: 106   attcgaaatggtgagaaccttttgcatgaaggaacgtgcctttttctcttcgccgcctat 165
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 12502 attcgaaatggtgagaaccttttgcatgaaggaacgtgcctttttctcttcgccgcctag 12443

                                                                         
Query: 166   aacgacagctctcttagccatgtatgttttcttcttttgcggtttcatttgatatatctg 225
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 12442 aacgacagctctcttagccatgtatgttttcttcttttgcggtttcatttgatagatctg 12383

                                                                         
Query: 226   ggatttgaaaggtaagtctttggcaacagattttggtacctttaaaccgttgaagttcct 285
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12382 ggatttgaaaggtaagtctttggcaacagattttggtacctttaaaccgttgaagttcct 12323

                                                                         
Query: 286   ttcaactctttcaaccttcttatatgtactgtcattgttggtcggtaaatcgattccaag 345
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12322 ttcaactctttcaaccttcttatatgtactgtcattgttggtcggtaaatcgattccaag 12263

                                                                         
Query: 346   agatgctctaatttgaccagttagtctcaaacccttccattcagttttatcttttatcaa 405
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 12262 agatgctctaatttgaccagttagtctcaaacccttccattcagttttatcttttagcaa 12203

                                                                         
Query: 406   caatgaagtaactgggttgtagaatttcttaacttggattggataccatgacctaagaat 465
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12202 caatgaagtaactgggttgtagaatttcttaacttggattggataccatgacctaagaat 12143

                                                                         
Query: 466   tataatgtcactcaatagtatcttatcctcaaaagttgccctgaaatggccttctggttt 525
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12142 tataatgtcactcaatagtatcttatcctcaaaagttgccctgaaatggccttctggttt 12083

                                                                         
Query: 526   tgatagagcacgcttgatttcaccacgaataccggnaacagtctttgatttgg-cacctt 584
             ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct: 12082 tgatagagcacgcttgatttcaccacgaataccggaaacagtctt-gatttgggcacctt 12024

                                                                         
Query: 585   cgaatcgtgcaactttcatagcgctagagatcatatcctttatgaaagcagngttcttga 644
             |||| |||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct: 12023 cgaaccgtgcaacttccatagcgctagagaacatatcctttatgaaggcagtgttcttga 11964

                                                                         
Query: 645   agattttgt-aggatatccanncagctttattttc-tcacaatttctacgcttgcatcga 702
             ||||||||| |||||| |||   ||||||| |||| ||||||||||||||||||||||||
Sbjct: 11963 agattttgtaaggataaccaacaagctttaatttcttcacaatttctacgcttgcatcga 11904

                                                                         
Query: 703   tctcctctacaata-cagtcgcagctattctgaaactttcagttgtatcactgttagcaa 761
             |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11903 tctcctctacaataccagtcgcagctattctgaaacttccagttgtatcactgttagcaa 11844

                                                                         
Query: 762   ct-tttggacacaccaaaaagtggt-tttggcgagcacaagggaccat-gaaagaatctg 818
             || |||| ||||  || |||||||| |||||||||||||||||||||| ||||||| |||
Sbjct: 11843 ctatttgaacaccacagaaagtggtatttggcgagcacaagggaccatagaaagaagctg 11784

                                                                         
Query: 819   tacattaa-cctgttctgggatatacttc-acattctattnccggttctaaagtcccta- 875
             |||| ||| | ||||||||  |||||||| |||||||| | | ||||||| |||| ||| 
Sbjct: 11783 tacaataagcatgttctggagtatacttcaacattctagtcctggttctagagtcactag 11724

                                                                     
Query: 876   tggtggtatttgggtagattttggaaacttttccaacccagagttaaacctaaagg 931
             |||| |||| | |||||| ||||||||| | ||||||| |||| |||| |||||||
Sbjct: 11723 tggt-gtatattggtagagtttggaaacgtctccaaccaagagataaaactaaagg 11669


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7707
Number of Sequences: 1807
Number of extensions: 7707
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)