BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG01FM1.SCF screened BAC_end
(1020 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig839 813 0.0
>3x_Contig839
Length = 3352
Score = 813 bits (410), Expect = 0.0
Identities = 471/486 (96%), Gaps = 4/486 (0%)
Strand = Plus / Minus
Query: 87 ccaaacttttttgctcgaagtcgttttctgtaatttgatgtttcctcaataaggacagta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2873 ccaaacttttttgctcgaagtcgttttctgtaatttgatgtttcctcaataaggacagta 2814
Query: 147 aactatggacggttctgtccatgttgtagttgttacccacgtaccttgttccaacctcta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2813 aactatggacggttctgtccatgttgtagttgttacccacgtaccttgttccaacctcta 2754
Query: 207 tttcaactagtggtttacctaaacttgaaatcaattggaagacagatttcttcttgtact 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2753 tttcaactagtggtttacctaaacttgaaatcaattggaagacagatttcttcttgtact 2694
Query: 267 ccaagatttggagccccttcttaacgtaaaatcttgactttgcaaacaaacgaccattta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2693 ccaagatttggagccccttcttaacgtaaaatcttgactttgcaaacaaacgaccattta 2634
Query: 327 agtaagcagacactctcaaagtttcttctttcgtcattgaatctatgccgtcaattctga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2633 agtaagcagacactctcaaagtttcttctttcgtcattgaatctatgccgtcaattctga 2574
Query: 387 tagtctcatttaccagctccccgggtctgacagtaatgaaggcccattttttataataat 446
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2573 tagtctcatttaccagctccccgggtctgacagtaatgaaggcccattttttataagaat 2514
Query: 447 gagttacagaatcttggtcggaaatgtatttttgtcggtattggaaggaatctgaatagt 506
|||| |||||| ||||||||| ||||| |||||||| ||||||||| ||||||||||||
Sbjct: 2513 gagtaacagaa-cttggtcgg-aatgttattttgtcgttattggaagaaatctgaatagt 2456
Query: 507 aatgtttggaacattgcttttttttattttcaagcccacaaatttatacttttgtccacc 566
|||||| | |||||||| | |||||||||||||||||||||||| |||| |||||||| |
Sbjct: 2455 aatgttggaaacattgc-tctttttattttcaagcccacaaattgatac-tttgtccagc 2398
Query: 567 gttaag 572
||||||
Sbjct: 2397 gttaag 2392
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,920
Number of Sequences: 1807
Number of extensions: 17920
Number of successful extensions: 199
Number of sequences better than 1.0e-20: 1
length of query: 1020
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1004
effective length of database: 10,329,639
effective search space: 10370957556
effective search space used: 10370957556
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)