BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG01RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig57 872 0.0
3x_Contig216 250 4e-66
>3x_Contig57
Length = 884
Score = 872 bits (440), Expect = 0.0
Identities = 453/456 (99%), Gaps = 1/456 (0%)
Strand = Plus / Plus
Query: 48 ctcttactgtctgagtacgtccatgcaaatcctgttgttggcaatatcccgttgatcttt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctcttactgtctgagtacgtccatgcaaatcctgttgttggcaatatcccgttgatcttt 488
Query: 108 ggaaggatgcatctgttggtctaccatttacgaggacgtcaccggtaatgacacctgtgc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggaaggatgcatctgttggtctaccatttacgaggacgtcaccggtaatgacacctgtgc 548
Query: 168 taatacggtcagccaaagcatccaacaaagtagtcttaccagcacctgatgatcccatta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 taatacggtcagccaaagcatccaacaaagtagtcttaccagcacctgatgatcccatta 608
Query: 228 gtgcagttaaagttccaggcttgacccaaccatcaacattatccaaaattcttctcgttt 287
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtgcagttaaagtaccaggcttgacccaaccatcaacattatccaaaattcttctcgttt 668
Query: 288 cagtcttgatttgaacatcat-aacagatattcttccaaaataccacttggtcagatcca 346
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 669 cagtcttgatttgaacatcataaacagatattcttccaaaataccacttggtcagatcca 728
Query: 347 atcttttcagccatcttttcattggagctatcacttttttcgtcttgggaatcattcccg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 atcttttcagccatcttttcattggagctatcacttttttcgtcttgggaatcattcccg 788
Query: 407 tttgtcatgtcttttagtaaactgtcattcgattcgatatcatttttcaagttctgattc 466
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tttgtcaagtcttttagtaaactgtcattcgattcgatatcatttttcaagttctgattc 848
Query: 467 ttctttttgagcttcattaagacggaccttgggaag 502
||||||||||||||||||||||||||||||||||||
Sbjct: 849 ttctttttgagcttcattaagacggaccttgggaag 884
>3x_Contig216
Length = 1898
Score = 250 bits (126), Expect = 4e-66
Identities = 195/214 (91%), Gaps = 3/214 (1%)
Strand = Plus / Plus
Query: 485 aagacggaccttgggaagactgtcatctcacccttttgcatctcacctttgttatactcg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagacggaccttgggaagactgtcatctcacccttttgcatctcacctttgttatactcg 60
Query: 545 attaatagtaaatataccgcaaggaaggaaacagcttatcataggacattacccccattt 604
|||||||||||||||||||||| |||| ||||||| || || || ||| || ||||| ||
Sbjct: 61 attaatagtaaatataccgcaa-gaagaaaacagcataacaaagaacaata-ccccaatt 118
Query: 605 tctccatctggtactggctttattaagaaaagactctttcatgtatgcagttccgcttaa 664
|||||||||| |||| |||||| | ||||||||||| |||||||||||| |||| |||
Sbjct: 119 tctccatctgtaactgtctttataagaaaaagactcttccatgtatgcagtaccgc-taa 177
Query: 665 catttgcagaccctggttcagaaccgacaacaga 698
||| ||||||||||||||||||||||||||||||
Sbjct: 178 catatgcagaccctggttcagaaccgacaacaga 211
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7068
Number of Sequences: 1807
Number of extensions: 7068
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 2
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)