BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZG02FM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1060                                                        1116   0.0  

>3x_Contig1060 
          Length = 4482

 Score = 1116 bits (563), Expect = 0.0
 Identities = 585/591 (98%), Gaps = 1/591 (0%)
 Strand = Plus / Minus

                                                                       
Query: 86  tgccaagatgtagcgaaaactatcatgaataaaggtgaaagaccagatgtaatcattgct 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tgccaagatgtagcgaaaactatcatgaataaaggtgaaagaccagatgtaatcattgct 532

                                                                       
Query: 146 attactggtggtggtatgattccagccaggataatcagatcttttttgaaatccaagggt 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 attactggtggtggtatgattccagccaggataatcagatcttttttgaaatccaagggt 472

                                                                       
Query: 206 caaaagaacattccaatccaagcaatcggtttgtcattatatgaagatttaggtctggat 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 caaaagaacattccaatccaagcaatcggtttgtcattatatgaagatttaggtctggat 412

                                                                       
Query: 266 gaacaagttgagacaattggaaaagaagttatcagaactcaatggttagattttggtgct 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaacaagttgagacaattggaaaagaagttatcagaactcaatggttagattttggtgct 352

                                                                       
Query: 326 ttggacaaacattttgattctttgatcggtaagagaattttgattgtcgatgaagttgat 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttggacaaacattttgattctttgatcggtaagagaattttgattgtcgatgaagttgat 292

                                                                       
Query: 386 gacacgagaactaccctacattatgccttgactgaattggaaaaagaggttcatgagcaa 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gacacgagaactaccctacattatgccttgactgaattggaaaaagaggttcatgagcaa 232

                                                                       
Query: 446 caggtgaaattgaacagattgagtgaggagactactttctctatctttgttttacacaac 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 caggtgaaattgaacagattgagtgaggagactactttctctatctttgttttacacaac 172

                                                                       
Query: 506 aaggacaagcctaaaaaggttgaactaccaaaagaactgttcgacaatgaaagatatatt 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 aaggacaagcctaaaaaggttgaactaccaaaagaactgttcgacaatgaaagatatatt 112

                                                                       
Query: 566 gcagctgttactgtgcctgacaaatggttatgctatccatgggaaagcattgatattgaa 625
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 111 gcagctgttactgtgcctgacaaatggttatgctatccatgggaagcaattgatattgaa 52

                                                              
Query: 626 gaacataccaagtttgctatccaacaa-gtaataactgattggagccgcat 675
           ||||||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct: 51  gaacataccaagtttgctatccaacaaggtaataactgaatggagcggcat 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8628
Number of Sequences: 1807
Number of extensions: 8628
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)