BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG03FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1784 1219 0.0
>3x_Contig1784
Length = 28126
Score = 1219 bits (615), Expect = 0.0
Identities = 721/751 (96%), Gaps = 4/751 (0%)
Strand = Plus / Minus
Query: 90 aaatttagcgtgtcatacataattcaactcagtatattctatagtcacaatataaatcta 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17743 aaatttagcgtgtcatacataattcaactcagtatattctatagtcacaatataaatcta 17684
Query: 150 tatactagaatgtaatatgttatacttcagctgccacagtggaaatattatggatatcag 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17683 tatactagaatgtaatatgttatacttcagctgccacagtggaaatattatggatatcag 17624
Query: 210 aacacttggatgatgtaaattgaaagaatatcagaaattacagaacttgaattcgcgaac 269
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17623 aacacttggatgaggtaaattgaaagaatatcagaaattacagaacttgaattcgcgaac 17564
Query: 270 gggttgaagttcttcgtacttgatgcatcgccatagcgcctcctgttgtctggtagaatc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17563 gggttgaagttcttcgtacttgatgcatcgccatagcgcctcctgttgtctggtagaatc 17504
Query: 330 agaatatatttcgtatatttttgatagataccaccacactgcagatgtttgataaccttc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17503 agaatatatttcgtatatttttgatagataccaccacactgcagatgtttgataaccttc 17444
Query: 390 tatcgatttatcgactagttcttcgaataagaacttaagtctggctacagcagaagaagt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17443 tatcgatttatcgactagttcttcgaataagaacttaagtctggctacagcagaagaagt 17384
Query: 450 ttcgagtgacgtggcagaatttctatgtagctccttttggtttattttggagttatgctt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17383 ttcgagtgacgtggcagaatttctatgtagctccttttggtttattttggagttatgctt 17324
Query: 510 gagatccgtatccaggtttgcctctttatcatgaagcacgatttttgccaaaccgatcaa 569
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 17323 gagatccgtatccaggtttgcctcttcatcaggaagcacgatttttgccaaaccgatcaa 17264
Query: 570 tgcctcgacagatgtagagtcatagtgcataacttttttcgaattccgctgtcgcttttt 629
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 17263 tgcctcgacagatgtagagtcatagtgcaaaac-tttttcgaattccgctgtcgcttttt 17205
Query: 630 cagagtgaccatgtgtatacaacacgaatccttgtgcgaggttgtggttcaaaattacat 689
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 17204 cagagtgaccatgtgtatacaacacgaatccttgtgcgaggttgtggttcaaattaacat 17145
Query: 690 attttgaagttacgtgtctaaactcatctaacgcaagctttacaattttcgatattcggc 749
||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||| |
Sbjct: 17144 attttgaagttacgttcttaaactcatctaacgcagcctttac-attttcgata-tcgtc 17087
Query: 750 attttcaaggtttatttccaatgc-aacaaccaaattctctgaataagaaagccgttact 808
|||||| |||| || ||||||||| ||||||||||| |||| | ||| || |||||||
Sbjct: 17086 attttccaggtataattccaatgcaaacaaccaaatcttctgcaatagatagtcgttact 17027
Query: 809 ttgattgatttgaggaaccagggggtctgaa 839
||||||||||||||| | ||||| ||||||
Sbjct: 17026 ctgattgatttgaggaccaaggggttctgaa 16996
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7045
Number of Sequences: 1807
Number of extensions: 7045
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)