BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG04FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1692 1150 0.0
>3x_Contig1692
Length = 16448
Score = 1150 bits (580), Expect = 0.0
Identities = 667/690 (96%), Gaps = 6/690 (0%)
Strand = Plus / Plus
Query: 87 ttgatctctttggctgccggtgttacattgaaccaattgtctcaatactacaaaaaggtt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2202 ttgatctctttggctgccggtgttacattgaaccaattgtctcaatactacaaaaaggtt 2261
Query: 147 tctcgtgttatgaccaacactccagctaaatacggttatggtactgcaattgtgtcacat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2262 tctcgtgttatgaccaacactccagctaaatacggttatggtactgcaattgtgtcacat 2321
Query: 207 tctactagcgtcgagcctcatgataaagccattgtatcggaattggttagccaagtcggt 266
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2322 tctactagcgtcgagcctcaggataaagccattgtatcggaattggttagccaagtcggt 2381
Query: 267 aaatgtttggaactaccagaaaaaaatatggacgcagctactgcgctagtcggctcgggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2382 aaatgtttggaactaccagaaaaaaatatggacgcagctactgcgctagtcggctcgggt 2441
Query: 327 ccagcttttgtactactaatgctagaatcaatgatggaagccggactaaagatgggcatc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2442 ccagcttttgtactactaatgctagaatcaatgatggaagccggactaaagatgggcatc 2501
Query: 387 ccattgaaggagtcccgcgagtgtgctatgaaagtgttggaaggtactgccaagatggtc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2502 ccattgaaggagtcccgcgagtgtgctatgaaagtgttggaaggtactgccaagatggtc 2561
Query: 447 gagatttcaggacaaagtcctggtgtgttgaagcaccaagtgtgtactccaggaggtact 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2562 gagatttcaggacaaagtcctggtgtgttgaagcaccaagtgtgtactccaggaggtact 2621
Query: 507 acgatcgctggtctatgtgtcatggaagacaaaggcgtcaagtccggcattatccgtggt 566
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2622 acgatcgctggtctatgtgtcatggaagacaagggcgtcaagtccggcattatccgtggt 2681
Query: 567 atcgaagaagcagcaagagtttccaaggaattgggccataagttgtgagcacatactatc 626
|||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct: 2682 atcgaagaagcagcaagagtttccaaggaattgggccaaaagaagtgagcacaaactatc 2741
Query: 627 tctgtacgctttataacagngggccctaataataattataattaatagtgggcataacat 686
||||||||||||||||||| | | |||||||||| |||| ||||||| | ||||||||
Sbjct: 2742 tctgtacgctttataacagt-agtcataataataataataa-taatagtagtcataacat 2799
Query: 687 tctcactcacatgaataatgtcacgtgaacaaaaaacaactgcattttaccttgtccacc 746
||||||||||||| | |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 2800 tctcactcacatg-agaatgtcacgtgaacaaaaaacaactgca--ttaccctgtccacc 2856
Query: 747 ccttaaaaccctttcaccaaactgtccttt 776
|||| |||||| ||||||| ||||||||||
Sbjct: 2857 cctt-aaacccgttcaccacactgtccttt 2885
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,289
Number of Sequences: 1807
Number of extensions: 13289
Number of successful extensions: 211
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)