BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG04RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1551 1439 0.0
>3x_Contig1551
Length = 9073
Score = 1439 bits (726), Expect = 0.0
Identities = 838/869 (96%), Gaps = 5/869 (0%)
Strand = Plus / Plus
Query: 45 gcttactatcaatccatacaatgcattgtattctccccgtggtattatagataaatacat 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3074 gcttactatcaatccatacaatgcattgtattctccccgtggtattatagataaatacat 3133
Query: 105 attacttgctttgtcaatattcaatccccttcaatgtagactcataagaattgttgtaat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3134 attacttgctttgtcaatattcaatccccttcaatgtagactcataagaattgttgtaat 3193
Query: 165 gctataattattgggaattattaagcgacaaagtaaattatcttagaggattgcagatta 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3194 gctataattattgggaattattaagcgacaaagtaaattatcttagaggattgcagatta 3253
Query: 225 ataagttttattataatttcacagcaaggaattgtttcagcactttagtccattaagcta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3254 ataagttttattataatttcacagcaaggaattgtttcagcactttagtccattaagcta 3313
Query: 285 gataactactatatataattttggaagagaataggaatcgaacttatgaagaacacagcc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3314 gataactactatatataattttggaagagaataggaatcgaacttatgaagaacacagcc 3373
Query: 345 attgagtttacagcaagtgattgtgaaagtagcttggtatattcggtatattaacaagta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3374 attgagtttacagcaagtgattgtgaaagtagcttggtatattcggtatattaacaagta 3433
Query: 405 acaaaaaaaaaaacacacaatgaactagaatgtagctgattagcatgatactgtactttc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3434 acaaaaaaaaaaacacacaatgaactagaatgtagctgattagcatgatactgtactttc 3493
Query: 465 tgtgatactaaatcaaatattactaatatcttgaatgtatatcattgaattacagcttat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3494 tgtgatactaaatcaaatattactaatatcttgaatgtatatcattgaattacagcttat 3553
Query: 525 tgccgaaagggattgaatctgtataaaaaggctgaaaaaacatacctcg-aaaaaaaata 583
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3554 tgccgaaagggattgaatctgtataaaaaggctgaaaaaacatacctcgaaaaaaaaata 3613
Query: 584 gcacggctgataatataaaccgtaaatatactattgaaaggcangatatatcaacagccc 643
|||||||||||||||||||||||||||||||||||||| |||| || |||||||||| ||
Sbjct: 3614 gcacggctgataatataaaccgtaaatatactattgaagggcaagaaatatcaacag-cc 3672
Query: 644 ttggcactgatactgcatagagataagatggcagatatcgaagctagaactattattaac 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3673 ttggcactgatactgcatagagataagatggcagatatcgaagctagaactattattaac 3732
Query: 704 gcgggctcaagcgtagtgagaggggtatttttggacttttacaaatattctgaatggtcc 763
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3733 gcggctccaagcgtagtgagaggggtatttttggactttacaaaatattctgaatggtcc 3792
Query: 764 actttcattaa-gaattatta-caattgacaaacaagatggccca-tgccagggaaagtt 820
||||||||||| ||| ||| | ||| |||||||||||| |||||| |||||||||||| |
Sbjct: 3793 actttcattaaggaaatatcaccaagtgacaaacaagaaggcccagtgccagggaaaggt 3852
Query: 821 taacgggttctattggatttcaccgggggatctcctcaaaagatggctcccgttgtcatt 880
| || |||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 3853 ttacaggttctattggatttcgacgggggatctcctcaaaagatggctccagttgtcatc 3912
Query: 881 accaacttcgaaccaatattttcttggac 909
|| |||| ||| || ||||||||||||
Sbjct: 3913 acaaactccgacgcagaattttcttggac 3941
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,315
Number of Sequences: 1807
Number of extensions: 12315
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)