BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG05RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1587 1304 0.0
>3x_Contig1587
Length = 10277
Score = 1304 bits (658), Expect = 0.0
Identities = 711/722 (98%), Gaps = 5/722 (0%)
Strand = Plus / Minus
Query: 41 gcttctcttaattgatcaactctgcttgccagtaggataagttattcgaacttgaagaga 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6499 gcttctcttaattgatcaactctgcttgccagtaggataagttattcgaacttgaagaga 6440
Query: 101 aaaaatatcaatgaaatatatacaatatgagaaaaaaagaaaaagaaaagaaaatgtata 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6439 aaaaatatcaatgaaatatatacaatatgagaaaaaaagaaaaagaaaagaaaatgtata 6380
Query: 161 cattacataccattcatacataaacacgactatgcctgattaatagtgttgaataatttc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6379 cattacataccattcatacataaacacgactatgcctgattaatagtgttgaataatttc 6320
Query: 221 ttcatacagttcagccaaacaatggtttcttcagcttaacctcagctcttaatgaccata 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6319 ttcatacagttcagccaaacaatggtttcttcagcttaacctcagctcttaatgaccata 6260
Query: 281 cctggacctgtgtcagttgtaactcttctcaatccctatctcatctcatctcatctcatc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6259 cctggacctgtgtcagttgtaactcttctcaatccctatctcatctcatctcatctcatc 6200
Query: 341 tcatctcatctcatcgtatctcagcgctcagtgtacaattttatgaaaatttcttttcca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6199 tcatctcatctcatcgtatctcagcgctcagtgtacaattttatgaaaatttcttttcca 6140
Query: 401 atatcagtgctgcccaattttcgcttacttcaacttgagaaatgaagtcaaaacaaacaa 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6139 atatcagtgctgcccaattttcgcttacttcaacttgagaaatgaagtcaaaacaaacaa 6080
Query: 461 tcaagataacggaggatattggtttgcgaccgggtaatgacaagtggaaaatatgagatc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6079 tcaagataacggaggatattggtttgcgaccgggtaatgacaagtggaaaatatgagatc 6020
Query: 521 atgtgacttgtatattccccgattctctctaattctcttacccggatatatttttgatat 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6019 atgtgacttgtatattccccgattctctctaattctcttacccggatatatttttgatat 5960
Query: 581 ccaattcacgtgacctagattccctatgctctatttcacatcttctgaacaattttgatg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5959 ccaattcacgtgacctagattccctatgctctatttcacatcttctgaacaattttgatg 5900
Query: 641 aagcttgttgcaatattatatatgatatggctaagcat-aagaacagccgaaaataggaa 699
| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 5899 agctttgttgcaatattatatatgatat-gctaagcataaagaacagccgaaaataggaa 5841
Query: 700 tcttatctta-cagatagcaggctattttatccgatttttattcataacaggagacatta 758
||| ||| || ||||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct: 5840 tctaatcataccagatagcaggctattttatccgatattta-tcataaca-gagacatta 5783
Query: 759 cc 760
||
Sbjct: 5782 cc 5781
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,422
Number of Sequences: 1807
Number of extensions: 11422
Number of successful extensions: 1086
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)