BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG06FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1646 1009 0.0
>3x_Contig1646
Length = 14145
Score = 1009 bits (509), Expect = 0.0
Identities = 623/653 (95%), Gaps = 6/653 (0%)
Strand = Plus / Plus
Query: 88 ttcattagttggtgcgatttcaatagtcattatgatatttcggtgtggtagtatatgtag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9931 ttcattagttggtgcgatttcaatagtcattatgatatttcggtgtggtagtatatgtag 9990
Query: 148 aagtacctaatgtgatacagtgtatctgtttgacttcgatatgttacattcatataattg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9991 aagtacctaatgtgatacagtgtatctgtttgacttcgatatgttacattcatataattg 10050
Query: 208 accaagttgataaaaaaaattgcagacaatacaaacgatgttaaacgctctttggtcctt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10051 accaagttgataaaaaaaattgcagacaatacaaacgatgttaaacgctctttggtcctt 10110
Query: 268 atttatatgatgatattaccaaaccttatcaacaacctcccttaaatcctacggaactta 327
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 10111 atttatatgatgatattaccaaaccttagcaacaacctcccttaaatcctacggaactta 10170
Query: 328 aaaaagtcagtagctaccgcttggttcttcttcttctttcatctccattggaaagatctc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10171 aaaaagtcagtagctaccgcttggttcttcttcttctttcatctccattggaaagatctc 10230
Query: 388 cgctgaaatggccaccattcctaactcctgagcattatgttcatcgcgtatgatttggaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10231 cgctgaaatggccaccattcctaactcctgagcattatgttcatcgcgtatgatttggaa 10290
Query: 448 caaaccaatcatcgattacttgatcctctcccaaaagctaccacatctacgatgtagaat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10291 caaaccaatcatcgattacttgatcctctcccaaaagctaccacatctacgatgtagaat 10350
Query: 508 atgattttgggttatgatccggagagtcagaaatctggatcatcatctatgaaactaagt 567
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10351 atga-tttgggttatga-ccggagagtcagaaatctggatcatcatctatgaaactaagt 10408
Query: 568 tttatctttataatcgaggtgtatttcataaaaaattttggggactagttcttgttttgg 627
|| ||||| |||||||||||||||||||||||||| || ||||||||||||||| ||| |
Sbjct: 10409 ttaatcttcataatcgaggtgtatttcataaaaaa-ttaggggactagttcttggttt-g 10466
Query: 628 gggttgaatctggcagccctacaagggtatgtttccgattaattcgccgtccaacgagaa 687
|||||||||||| ||||| || ||||||||| | ||||| |||| ||||| ||||||
Sbjct: 10467 gggttgaatctgccagcctaccaggggtatgttccgcattaa-tcgcggtccagcgagaa 10525
Query: 688 acaaccttactcatctaacccccgtccgggct-ttttcttaatcgaggtgaca 739
|||| ||||||| |||| | |||| | | || ||| ||||||||||||||||
Sbjct: 10526 gcaacattactcagctaagcaccgttctgtctctttccttaatcgaggtgaca 10578
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8236
Number of Sequences: 1807
Number of extensions: 8236
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)