BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG06RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1537 1110 0.0
>3x_Contig1537
Length = 10796
Score = 1110 bits (560), Expect = 0.0
Identities = 613/623 (98%), Gaps = 6/623 (0%)
Strand = Plus / Plus
Query: 52 ctttccagtcgttcatcattagaagatgggacgtcttgcaatgagtcccattgcctagtg 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2830 ctttccagtcgttcatcattagaagatgggacgtcttgcaatgagtcccattgcctagtg 2889
Query: 112 aatggagtttcgatttccgccactccttcagaggaattttcattaatccattccttaggg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2890 aatggagtttcgatttccgccactccttcagaggaattttcattaatccattccttaggg 2949
Query: 172 gtataattccaaacttcttgaaccattattgggatgattggtgacattatgctacggtaa 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2950 gtataattccaaacttcttgaaccattattgggatgattggtgacattatgctacggtaa 3009
Query: 232 gtgtcaagaatatggaacaatgtcgtttgaattgacaatcgtttcttgttattcaaggag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3010 gtgtcaagaatatggaacaatgtcgtttgaattgacaatcgtttcttgttattcaaggag 3069
Query: 292 tctgaatataaggagtcttttgtgacactgaaataaagtgcggaaagatcattgttcatg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3070 tctgaatataaggagtcttttgtgacactgaaataaagtgcggaaagatcattgttcatg 3129
Query: 352 tggtattgaacctgagttaagacatttgagaaattgtactgttgatagagttttttggtt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3130 tggtattgaacctgagttaagacatttgagaaattgtactgttgatagagttttttggtt 3189
Query: 412 tcctggctcaatgccttcagatttagtaatgtatactggtccactctgcgcagctctgaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3190 tcctggctcaatgccttcagatttagtaatgtatactggtccactctgcgcagctctgaa 3249
Query: 472 aaaggtattaatccgtgactttgagtctcttgtaaattacctaagatgaattttaacgtt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3250 aaaggtattaatccgtgactttgagtctcttgtaaattacctaagatgaatttaaacgtt 3309
Query: 532 agtctaaacttctttaaagcatctgcaacatgtttcattacagttgggccagncac-aca 590
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 3310 agtctaaacttctttaaagcatctgcaacatgtttcattacagttgggccagcaacaaca 3369
Query: 591 tcagaagtaaag-ttgactgtgctactaat-atctcaaa-cgtcaacgccc-aagccgg- 645
|||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct: 3370 tcagaagtaaagtttgactgtgctactaataatctcaaaccgtcaacgcccaaagccgga 3429
Query: 646 agattgcccttcgggtcgccttt 668
|||||| ||||||||||||||||
Sbjct: 3430 agattggccttcgggtcgccttt 3452
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6598
Number of Sequences: 1807
Number of extensions: 6598
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)