BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG07FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 1162 0.0
>3x_Contig1541
Length = 10565
Score = 1162 bits (586), Expect = 0.0
Identities = 675/701 (96%), Gaps = 3/701 (0%)
Strand = Plus / Plus
Query: 87 agccatttccatattaagccagtcgttactcctataaaacacatcttcgatttccttatg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7215 agccatttccatattaagccagtcgttactcctataaaacacatcttcgatttccttatg 7274
Query: 147 ccctttcagcatgacatcattgaactcattgagtgattccacaatagatcgcgaaccacc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7275 ccctttcagcatgacatcattgaactcattgagtgattccacaatagatcgcgaaccacc 7334
Query: 207 cgtttggttcttgagcttctttttggcagcctttaaagcccaatccatcgtttaaattca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7335 cgtttggttcttgagcttctttttggcagcctttaaagcccaatccatcgtttaaattca 7394
Query: 267 aagccaccacgggagctatccatgtaaagctgtgaatttctgagctgggtagaaattggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7395 aagccaccacgggagctatccatgtaaagctgtgaatttctgagctgggtagaaattggt 7454
Query: 327 cgagtctttacccacaaatatagaagtactggggataaaagcgtctaaacttttttgtta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7455 cgagtctttacccacaaatatagaagtactggggataaaagcgtctaaacttttttgtta 7514
Query: 387 ttattttggttttgattcattatataaaacgacttcaattatacaaaccaaaacaacgca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7515 ttattttggttttgattcattatataaaacgacttcaattatacaaaccaaaacaacgca 7574
Query: 447 agttttgtcagagtacatgttgctgtgcttgataccgattgacctacaccgatatttttg 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7575 agttttgtcagagtacatgttgctgtgcttgataccgattgacctacaccgata-ttttg 7633
Query: 507 gttcggtaactaatcaaacatgaggatcaaccagttaggataaagatagtttgatactat 566
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 7634 gttcggtaactaatcaaacatgaggatcaaccagttaggataaagaaagtttgatactat 7693
Query: 567 ccacgtgaatatcacgttgatcataccgaaagagattaaacctattttgacaatggtaag 626
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 7694 ccacgtgaatatcacgtggatcatacggaaagagattaaacctattttgacaatggtaag 7753
Query: 627 gnttttgattctttaagatttgatgaaagcctgatatttatgttggaaaggttactcaaa 686
||| || ||| ||||| |||||||||| |||||||||||| |||||| ||||||| |
Sbjct: 7754 aatttgaatacttcaagatatgatgaaagcatgatatttatgtaggaaagtttactcaga 7813
Query: 687 agtgatttgaaactggttatcaggacaacagtttccgattaaaaatatacggggaagatt 746
||||||||||||||| |||||||||||||||||||||||| ||||||||| | | |||||
Sbjct: 7814 agtgatttgaaactgtttatcaggacaacagtttccgattcaaaatatactgag-agatt 7872
Query: 747 -tttcaacaattgctgtgttgatgactgcccgaactttttt 786
|||||||||||||| |||||||||||| ||||| ||||
Sbjct: 7873 atttcaacaattgcttgtttgatgactgcctgaactctttt 7913
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8253
Number of Sequences: 1807
Number of extensions: 8253
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)