BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG07RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 1189 0.0
>3x_Contig675
Length = 2979
Score = 1189 bits (600), Expect = 0.0
Identities = 698/719 (97%), Gaps = 9/719 (1%)
Strand = Plus / Minus
Query: 47 cttgcaacaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 cttgcaacaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttt 1613
Query: 107 tcatcagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 tcatcagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatca 1553
Query: 167 catcaataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcatag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1552 catcaataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagag 1493
Query: 227 ttgttccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggaga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1492 ttgttccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggaga 1433
Query: 287 aacaacaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcatagg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 aacaacaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcatagg 1373
Query: 347 aataaaaaccgtacgctctacactgtacactaccacgncgtcttcgctcactccatggta 406
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1372 aataaaaaccgtacgctctacactgtacactaccacg-cgtcttcgctcactccatggta 1314
Query: 407 tacaagggtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattnttt 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1313 tacaagggtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatatttttt 1254
Query: 467 ttttttctttcg-aaaaaacgtcgactcaagccatcatcacaaactcgtcccag-agcaa 524
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1253 ttttttctttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccagaagcaa 1194
Query: 525 cgtacgactcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaatta 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1193 cgtacgactcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaatta 1134
Query: 585 gccccaaggcaattc-taagcactcgaggg-aaaaaaaaagatagaaacggacatt-aca 641
||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct: 1133 gccccaaggcaattcttaagcactcgagggaaaaaaaaaagatagaaacgaacattcaca 1074
Query: 642 cacaggaacttacagctgagagatag-aagggaacagttgaaaaaaag-ataagcaatga 699
||||| ||||||||||||||||| || |||| |||||| ||||||||| | |||||||||
Sbjct: 1073 cacagaaacttacagctgagagaaagaaaggaaacagtagaaaaaaagaaaaagcaatga 1014
Query: 700 tgaagtaagcctgattaacattgttggtgcgagcgcccatgccttgcataccttacctg 758
|||||||||||||||||||| || ||||||||||||| |||| |||||||| |||||||
Sbjct: 1013 tgaagtaagcctgattaaca-tggtggtgcgagcgccaatgctttgcatactttacctg 956
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,961
Number of Sequences: 1807
Number of extensions: 12961
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)