BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG08RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1651 1253 0.0
>3x_Contig1651
Length = 13087
Score = 1253 bits (632), Expect = 0.0
Identities = 701/720 (97%), Gaps = 3/720 (0%)
Strand = Plus / Minus
Query: 49 cttaacacaagtacttttagaacatcctgcaggcccacttaacagaagaatccgttcatc 108
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7746 cttaacacaagtacttttagaacaacctgcaggcccacttaacagaagaatccgttcatc 7687
Query: 109 tgatttccctgagaccataccctctaaataataccgtacttcctctatcttcttcttatg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7686 tgatttccctgagaccataccctctaaataataccgtacttcctctatcttcttcttatg 7627
Query: 169 caatgctatgtcatcaactctcttcggactaaatttgtcataccattgcattgctcctgg 228
|||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 7626 caatgcgatgtcatcaactctcttcggactaaatttgtcataccattgcagctcacttgg 7567
Query: 229 caacgtccgttctccactaggtcgtgtcaaatccacatgatccaaattcgtgtaaggaaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7566 caacgtccgttctccactaggtcgtgtcaaatccacatgatccaaattcgtgtaaggaaa 7507
Query: 289 ggaaggaaccgacgtagatgatcgtttcaccttcttatcctttcttggggatgctctgct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7506 ggaaggaaccgacgtagatgatcgtttcaccttcttatcctttcttggggatgctctgct 7447
Query: 349 tatcctatcgctgatttcactgatagatncgtttcaaactaggagttgacatgctataac 408
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7446 tatcctatcgctgatttcactgatagat-cgtttcaaactaggagttgacatgctataac 7388
Query: 409 atcattaaaattcctcaatttatgacgaaaataaatgtaatgtcgtttagttcaattctg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7387 atcattaaaattcctcaatttatgacgaaaataaatgtaatgtcgtttagttcaattctg 7328
Query: 469 caaaacggccgagctccgtcttggcgagctattcggtatataatttggtattaagagtag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7327 caaaacggccgagctccgtcttggcgagctattcggtatataatttggtattaagagtag 7268
Query: 529 tttacctctcttcaatctgtattctcttatattgagtgctaatctctgactgtgg-aata 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7267 tttacctctcttcaatctgtattctcttatattgagtgctaatctctgactgtggaaata 7208
Query: 588 tctagcttacccgcacattgaaattaagcattccatttgatatttgctagtcgaatatga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7207 tctagcttacccgcacattgaaattaagcattccatttgatatttgctagtcgaatatga 7148
Query: 648 a-tatatgaatgggataacatcgtatagcttagatgtgggatctaaaatgcccatagagc 706
| ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 7147 attatatgaatggaataacatcgtatagcttagatgtggtatctaaaatgcacatagagc 7088
Query: 707 gagttggaatcaagcaatagtcactactgataaggtacatccttaaaccgaaagatgacc 766
|||||| |||||||||||||||| |||||||||||||||| |||| || || ||||||||
Sbjct: 7087 gagttgaaatcaagcaatagtcagtactgataaggtacatacttagacagagagatgacc 7028
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6583
Number of Sequences: 1807
Number of extensions: 6583
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)