BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG09FM1.SCF screened BAC_end
(988 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1653 1201 0.0
>3x_Contig1653
Length = 14012
Score = 1201 bits (606), Expect = 0.0
Identities = 664/680 (97%), Gaps = 3/680 (0%)
Strand = Plus / Minus
Query: 88 tatgaggctaaccatgagatcaatcacatagacggtgaaaggaagtatgatctaattaag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8810 tatgaggctaaccatgagatcaatcacatagacggtgaaaggaagtatgatctaattaag 8751
Query: 148 agaagattctcattcacgaagagcgattatatattagagattattgatgccatgcaacaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8750 agaagattctcattcacgaagagcgattatatattagagattattgatgccatgcaacaa 8691
Query: 208 gagaatagagatttaatgaacacttcaaagggttctgaaacaactacagatgctaatgct 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8690 gagaatagagatttaatgaacacttcaaagggttctgaaacaactacagatgctaatgct 8631
Query: 268 ggtgaagacgctaatgatgaaaaggtctcatttcaagcaactgaaaaacaaaaccaacta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8630 ggtgaagacgctaatgatgaaaaggtctcatttcaagcaactgaaaaacaaaaccaacta 8571
Query: 328 acggagaaaagagaaagacaacgtgaactgtatttgaaatatcacgataccaggtttttc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8570 acggagaaaagagaaagacaacgtgaactgtatttgaaatatcacgataccaggtttttc 8511
Query: 388 gcacaggagaagagaaagctagatttgcatcataagaagatcgtctctcccttgactacc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8510 gcacaggagaagagaaagctagatttgcatcataagaagatcgtctctcccttgactacc 8451
Query: 448 gtcggtaacttgccttaccgtcgtctaatgcggaaattaggagcagacgtgacttattct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8450 gtcggtaacttgccttaccgtcgtctaatgcggaaattaggagcagacgtgacttattct 8391
Query: 508 gaaatggctttggctgttcccttgattc-aggtacaaattcagaatgggcactaccgata 566
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8390 gaaatggctttggctgttcccttgattcaaggtacaaattcagaatgggcactaccgaag 8331
Query: 567 gcccattgctcanagtttcctggttttgttgttcanattgcatgttcaaaaacttggc-a 625
|||||||||||| |||||||||| |||| |||||| |||||||||||||||||||||| |
Sbjct: 8330 gcccattgctcagagtttcctgggtttggtgttcaaattgcatgttcaaaaacttggcaa 8271
Query: 626 gctgcaaaggctgcagaagcacttgctgctaacgtcactggagttagcgaaataaatcta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8270 gctgcaaaggctgcagaagcacttgctgctaacgtcactggagttagcgaaataaatcta 8211
Query: 686 tacagtggttgccggattgatcttttattcagaccagggagcgggaagcgctttactaga 745
|||||||||||| |||||||||||||| ||||| ||| ||| |||||||| ||||||||
Sbjct: 8210 aacagtggttgcccgattgatcttttatacagacaaggtagc-ggaagcgcattactaga 8152
Query: 746 ttatcctgccagaatgatcc 765
| ||||||||||||||||||
Sbjct: 8151 taatcctgccagaatgatcc 8132
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6195
Number of Sequences: 1807
Number of extensions: 6195
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 988
length of database: 10,358,551
effective HSP length: 16
effective length of query: 972
effective length of database: 10,329,639
effective search space: 10040409108
effective search space used: 10040409108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)