BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG09RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1707 1011 0.0
>3x_Contig1707
Length = 16216
Score = 1011 bits (510), Expect = 0.0
Identities = 619/638 (97%), Gaps = 13/638 (2%)
Strand = Plus / Plus
Query: 41 tacacccagctcttcccagcttaattcattgaggtttaaatttgacccgtctaattcttt 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15086 tacacccagctcttcccagcttaattcattgaggtttaaatttgacccgtctaattcttt 15145
Query: 101 tagtattt-atcatctt-agtttt-atagctttgatatccttgagtaaaggctcaatttg 157
|||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 15146 tagtatttcatcatcttcagttttcatagctttgatatccttgagtaaaggctcaatttg 15205
Query: 158 tccttcttctacatcacatgtttcgatacaatttaatactgcttcgacagccgttggaat 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15206 tccttcttctacatcacatgtttcgatacaatttaatactgcttcgacagccgttggaat 15265
Query: 218 attctgtggtagtgatgtaacatgcaattttttaagtaactgagaatattgtttaaagac 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15266 attctgtggtagtgatgtaacatgcaattttttaagtaactgagaatattgtttaaagac 15325
Query: 278 ccttttctgatctttgaacatggcactcaatgatgatagaagacgtatctcctctgggga 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15326 ccttttctgatctttgaacatggcactcaatgatgatagaagacgtatctcctctgggga 15385
Query: 338 tctagtaagttcgtattctagaatggttctagacaatttcgtaactgttgaaactccaaa 397
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 15386 tctagtaagttcgtattctagaatggttctagacaatttcgt-actgttgaaactccaaa 15444
Query: 398 aaatcttcaaaagtaagtgagtaaccgtattatccgcctcgccgtgttgtaaagattcca 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15445 aaatcttcaaaagtaagtgagtaaccgtattatccgcctcgccgtgttgtaaagattcca 15504
Query: 458 attagcattcaagcgttttcagtatgtgttctacgacatcatcggattccatctgcttaa 517
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15505 ataagcattcaagcgttttcagtatgtgttctacgacatcatcggattccatctgcttaa 15564
Query: 518 aattctctttcgcatattggtagtgtagtattcccctattt-tatacccaa-gtatcg-a 574
||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| |
Sbjct: 15565 aattctctttcgcatattggtagtgtagtattcccctatttctatacgcaaggtatcgaa 15624
Query: 575 tcgaatcgagagta-gtgaagaattctcgtataga-cccatttattc-gtttgatgacat 631
||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 15625 gcgaatcgagagtaggtgaagaatactcgtatagaccccatttattcggtttgatgacat 15684
Query: 632 -tatttc-aattacctgtcaaa-gtttctttagcatcg 666
|||||| ||| |||||||||| || ||||||||||||
Sbjct: 15685 ctatttcaaataacctgtcaaatgtctctttagcatcg 15722
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7293
Number of Sequences: 1807
Number of extensions: 7293
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)