BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG10FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1717 773 0.0
>3x_Contig1717
Length = 18389
Score = 773 bits (390), Expect = 0.0
Identities = 469/490 (95%), Gaps = 4/490 (0%)
Strand = Plus / Minus
Query: 206 tgaaataagaatgttattcgttggctttattccagtaccagcggtttgaagtgggtccaa 265
|||||||||||||||||| |||| |||||| ||||| ||| | |||||||||||| |||
Sbjct: 18179 tgaaataagaatgttattgtttgggtttattgcagtagcagggttttgaagtgggtgcaa 18120
Query: 266 cccaccaaattcaatgcaatctttgtcccagcatgcaacctgaccatcgtacgatccaat 325
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18119 ggcagcaaattcaatgcaatctttgtcccagcatgcaacctgaccatcgtacgatccaat 18060
Query: 326 taacaaacctttggcactgttcaaggatgccttgaatttctgcttaccaattttgaatgg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18059 taacaaacctttggcactgttcaaggatgccttgaatttctgcttaccaattttgaatgg 18000
Query: 386 aagttccagtatattaattctagattttaacattcgtgtatcaataacatcgatttctct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17999 aagttccagtatattaattctagattttaacattcgtgtatcaataacatcgatttctct 17940
Query: 446 tgcattacgtttaatacagtacaaataatgtccgttatccgacttaatgacttggtagat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17939 tgcattacgtttaatacagtacaaataatgtccgttatccgacttaatgacttggtagat 17880
Query: 506 tccatttgaccacgagtccaatgaatcacgctcacttattagttcagatttagtacttct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17879 tccatttgaccacgagtccaatgaatcacgctcacttattagttcagatttagtacttct 17820
Query: 566 agtatcaattcgtagcacttctgttttataagttccaacaaccctgacattgtcatgtac 625
||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct: 17819 agtatcaattcgtagcacttctgttttataagtaccagcaaacctgacattgtcatgtac 17760
Query: 626 cttgtt-tattcatcaaa-cctgattcgatagccttctgtgatgactttcccgcatgatt 683
|| ||| ||||||||||| | |||| |||||||||||||||||||| |||||||||||||
Sbjct: 17759 ctcgttatattcatcaaagcatgatacgatagccttctgtgatgac-ttcccgcatgatt 17701
Query: 684 ggttttgtcc 693
|||||||||
Sbjct: 17700 -gttttgtcc 17692
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7025
Number of Sequences: 1807
Number of extensions: 7025
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)