BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZG10RM1.SCF screened BAC_end
         (960 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1187                                                        1078   0.0  

>3x_Contig1187 
          Length = 6482

 Score = 1078 bits (544), Expect = 0.0
 Identities = 599/616 (97%), Gaps = 1/616 (0%)
 Strand = Plus / Minus

                                                                        
Query: 44   gctttcaaataatagatagtggagttttttaactccgtccacgttttcatgtcagaactt 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1806 gctttcaaataatagatagtggagttttttaactccgtccacgttttcatgtcagaactt 1747

                                                                        
Query: 104  aatgaataaaacattctactattcgattgcggtaatggtttaggagcaagtggctgtgag 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1746 aatgaataaaacattctactattcgattgcggtaatggtttaggagcaagtggctgtgag 1687

                                                                        
Query: 164  tttttcggacctgcttcttcatttttttcattggattgcgtaggatttgaatgcatactg 223
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1686 tttttcggacctgcttcttcatttttttcagtggattgcgtaggatttgaatgcatactg 1627

                                                                        
Query: 224  ggtgatcgacctggagatggacagggttgacttatgtctggttttggaccagatggtgta 283
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1626 ggtgatcgacctggagatggacagggttgacttaggtctggttttggaccagatggtgta 1567

                                                                        
Query: 284  tttggttgcttttgagaagagtttccactgatgacaaccattggattaatgggactcgca 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1566 tttggttgcttttgagaagagtttccactgatgacaaccattggattaatgggactcgca 1507

                                                                        
Query: 344  tcatgtaagttacggtgctgagaagaaatgacagattccagatccatcacttgagtatta 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1506 tcatgtaagttacggtgctgagaagaaatgacagattccagatccatcacttgagtatta 1447

                                                                        
Query: 404  ggcaaaaagtctgattctaggcttcttgcttgtaagtcgaccaggttttcattatgcggg 463
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1446 ggcaaaaagtctgattctaggcttcttgcttgtaagtcgaccaggttttcattaggcggg 1387

                                                                        
Query: 464  aaaacagattttaagcttagttcaggtgtccttgatatatgtaaagatgtacaataaatg 523
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1386 aaaacagattttaagcttagttcaggtgtccttgatataggtaaagatgtacaataaatg 1327

                                                                        
Query: 524  ttcatttctttattgaagtataataaattattgcttgtagtcaaaa-cggggttcatacc 582
            |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 1326 ttcatttctttattgaagtataataaattattgcttgtagtcaaaaccggggtccatacc 1267

                                                                        
Query: 583  ggcacaacctcttgtcttgacatgttatttaagaacatttcaacttctttagtagaaaga 642
            |||||  |||||||||||| | |||| |||  |  | |||||||||||||||||||||||
Sbjct: 1266 ggcaccccctcttgtcttgccctgttctttccgcgcctttcaacttctttagtagaaaga 1207

                            
Query: 643  attttgatttctgact 658
            || |||||||||||||
Sbjct: 1206 atgttgatttctgact 1191


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8472
Number of Sequences: 1807
Number of extensions: 8472
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)