BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZG11FM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig602                                                         1233   0.0  

>3x_Contig602 
          Length = 2648

 Score = 1233 bits (622), Expect = 0.0
 Identities = 663/674 (98%), Gaps = 2/674 (0%)
 Strand = Plus / Plus

                                                                        
Query: 88   ccgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaa 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  ccgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaa 756

                                                                        
Query: 148  taccagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccat 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  taccagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccat 816

                                                                        
Query: 208  accatttcatcttttcgccaaatgcggaagaaggcgctaggatgctgggtgaaacagagc 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  accatttcatcttttcgccaaatgcggaagaaggcgctaggatgctgggtgaaacagagc 876

                                                                        
Query: 268  caactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctg 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  caactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctg 936

                                                                        
Query: 328  gtaacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaa 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  gtaacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaa 996

                                                                        
Query: 388  atccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtg 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  atccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtg 1056

                                                                        
Query: 448  tcattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgcca 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tcattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgcca 1116

                                                                        
Query: 508  tgtgtaaagacattttaattgccagtatatgtggcaatattgctgcaggttgtgccatcg 567
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 tgtgtaaagacatttcaattgccagtatatgtggcaatattgctgcaggttgtgccatcg 1176

                                                                        
Query: 568  aacagatcggtgtaccatctcacattggaatgcactgaaataaaacgacttttgcagata 627
            |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 1177 aacagatcggtgtaccatctcacaatggaatgcactggaataaaacgacttttgcagata 1236

                                                                        
Query: 628  gattattatattatttatccacttatgaactgaaccagggccacagggaaatattgaact 687
            |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 1237 gattattatattatttatccacttatgaactgaagcagggccacagtgaaatattgaact 1296

                                                                        
Query: 688  cttttc-accaatgaaattttaagtctgtaggtccttattggg-acagttagatcagttt 745
            || ||| ||||||||||| |||||||||||||| | ||||||| ||||||||||||||||
Sbjct: 1297 ctcttcaaccaatgaaatattaagtctgtaggtacctattgggaacagttagatcagttt 1356

                          
Query: 746  tttattttaatttg 759
            ||||||||||||||
Sbjct: 1357 tttattttaatttg 1370


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7754
Number of Sequences: 1807
Number of extensions: 7754
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)