BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZG11FM1.SCF screened BAC_end (919 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig602 1233 0.0 >3x_Contig602 Length = 2648 Score = 1233 bits (622), Expect = 0.0 Identities = 663/674 (98%), Gaps = 2/674 (0%) Strand = Plus / Plus Query: 88 ccgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaa 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 697 ccgaagagttgtcatttgagggaactctgaaaacaggtcaaacgtttatatgggaaccaa 756 Query: 148 taccagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccat 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 757 taccagatttgtgtaacgttgagcacctcgaagggattaagaagttgctcaacggaccat 816 Query: 208 accatttcatcttttcgccaaatgcggaagaaggcgctaggatgctgggtgaaacagagc 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 817 accatttcatcttttcgccaaatgcggaagaaggcgctaggatgctgggtgaaacagagc 876 Query: 268 caactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctg 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 877 caactgaactttcggattgcagcacaatattattgaaattagcagcattgattaaacctg 936 Query: 328 gtaacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaa 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 937 gtaacatttgtgtcctcagatgtggtaaaaaagggtcattggccttaatttgcaataaaa 996 Query: 388 atccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtg 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 997 atccatcaaacgatgacattatccatttcccagcataccattacaagactccagaatgtg 1056 Query: 448 tcattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgcca 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1057 tcattgatccaacaggaggcggaaatactttccttggagcatttgcattcgcatacgcca 1116 Query: 508 tgtgtaaagacattttaattgccagtatatgtggcaatattgctgcaggttgtgccatcg 567 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1117 tgtgtaaagacatttcaattgccagtatatgtggcaatattgctgcaggttgtgccatcg 1176 Query: 568 aacagatcggtgtaccatctcacattggaatgcactgaaataaaacgacttttgcagata 627 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct: 1177 aacagatcggtgtaccatctcacaatggaatgcactggaataaaacgacttttgcagata 1236 Query: 628 gattattatattatttatccacttatgaactgaaccagggccacagggaaatattgaact 687 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct: 1237 gattattatattatttatccacttatgaactgaagcagggccacagtgaaatattgaact 1296 Query: 688 cttttc-accaatgaaattttaagtctgtaggtccttattggg-acagttagatcagttt 745 || ||| ||||||||||| |||||||||||||| | ||||||| |||||||||||||||| Sbjct: 1297 ctcttcaaccaatgaaatattaagtctgtaggtacctattgggaacagttagatcagttt 1356 Query: 746 tttattttaatttg 759 |||||||||||||| Sbjct: 1357 tttattttaatttg 1370 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7754 Number of Sequences: 1807 Number of extensions: 7754 Number of successful extensions: 55 Number of sequences better than 1.0e-20: 1 length of query: 919 length of database: 10,358,551 effective HSP length: 16 effective length of query: 903 effective length of database: 10,329,639 effective search space: 9327664017 effective search space used: 9327664017 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)