BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG11RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 1116 0.0
>3x_Contig1737
Length = 17214
Score = 1116 bits (563), Expect = 0.0
Identities = 656/679 (96%), Gaps = 6/679 (0%)
Strand = Plus / Minus
Query: 47 atgattcctgatctcctactgcagtcaccagagatggcagaatcgtttgatttctttgtg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16802 atgattcctgatctcctactgcagtcaccagagatggcagaatcgtttgatttctttgtg 16743
Query: 107 aaccagacttcaaaattgttggttcctgccccaagctcaatttatacccgtaacccattc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16742 aaccagacttcaaaattgttggttcctgccccaagctcaatttatacccgtaacccattc 16683
Query: 167 ttcaatttcttaccccgcatggctatgagtaacaccgcattaatgaacttgttgttggtg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16682 ttcaatttcttaccccgcatggctatgagtaacaccgcattaatgaacttgttgttggtg 16623
Query: 227 tttggagccaaccataagcataag-attctacaataccaggagttatcaaatggagattc 285
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 16622 tttggagccaaccataagcataagcattctacaataccaggagttatcaaatggagattc 16563
Query: 286 ctctttggtggctaatgacttgttgattaatactttcaccaaccttatgggtcagttaac 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16562 ctctttggtggctaatgacttgttgattaatactttcaccaaccttatgggtcagttaac 16503
Query: 346 caattttgattcaagaaatagtgattcaaccttggctaccattctattgttagctgcttt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16502 caattttgattcaagaaatagtgattcaaccttggctaccattctattgttagctgcttt 16443
Query: 406 cgacatcttctttggtgataagaaacaaaaatggagaacgcatgtttatggcgcaaggaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16442 cgacatcttctttggtgataagaaacaaaaatggagaacgcatgtttatggcgcaaggaa 16383
Query: 466 aatcatgaaggaaaggatttctaacgatacaggatcagtaatgttgtct-ataacagtgc 524
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 16382 aatcatgaaggaaaggatttctaacgatacaggatcagtaatgttgtctaataacagtgc 16323
Query: 525 agatgtgggacaagagtatttccttttaa-atggttttgcttatactgacatcatttcgg 583
|||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 16322 agatgtggaacaagagtatttccttttaagatgg-tttgcttatactgacatcatttcgt 16264
Query: 584 ctttatctttcacgaattcaattaaccattattcataaacttaccactttgcggttcgaa 643
||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct: 16263 ctttatcttcaacgaattcaattaa-caatattcataaacttaccactttgcggtacgaa 16205
Query: 644 atggaaaccccctttttatgacagcttgatgcaaaagatgatgttatttaaaaatttcga 703
||||||| || || || | |||||||||||||| |||||||||||||| ||| || ||||
Sbjct: 16204 atggaaa-ccactattaaggacagcttgatgcagaagatgatgttattaaaagatatcga 16146
Query: 704 gtccttaccaggaatggaa 722
|| ||| |||||||||||
Sbjct: 16145 gtacttcacaggaatggaa 16127
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,305
Number of Sequences: 1807
Number of extensions: 14305
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)