BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG12FM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1142 902 0.0
>3x_Contig1142
Length = 5741
Score = 902 bits (455), Expect = 0.0
Identities = 544/566 (96%), Gaps = 6/566 (1%)
Strand = Plus / Minus
Query: 88 ttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaaga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttttacgagattatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaaga 591
Query: 148 gaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcgaata 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaaatcgatggtgaaactgaagaatttacccactggcaaatcctggttagcattcgaata 531
Query: 208 atcatcttccgtagtgacacctttataccttataaattcatgttgaggctcaaactctga 267
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 530 atcatcttccgtagtgacacctttataccttagaaattcatgttgaggctcaaactctga 471
Query: 268 agagacgactttgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agagacgactttgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctc 411
Query: 328 tgtcttggatgtgactttcttcttaaagatgatctcatcatcagtattgataatgttgta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgtcttggatgtgactttcttcttaaagatgatctcatcatcagtattgataatgttgta 351
Query: 388 cagtgtgaataaatcttctttatcctgaggttgaagagtcaaaatggctctttccccact 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cagtgtgaataaatcttctttatcctgaggttgaagagtcaaaatggctctttccccact 291
Query: 448 gtgtgaaccggtcactttatagattaacctcattgcttctttatccgtttacttgagaca 507
|||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct: 290 gtgtgaaccggtcactttattgattaacctcattgcttctttacccgttaacttgagaca 231
Query: 508 cctcttttgggtacgttctgtatttaagtgctgttttaaataaattgctgtcaagtgttt 567
|||| ||||||||||||||||| |||||||||| ||| ||||||||||||||| ||| |
Sbjct: 230 cctc-tttgggtacgttctgta-ttaagtgctg-tttcaataaattgctgtcaggtg-ta 175
Query: 568 taaggtatgcttttgccaatacctnttttatttcatgatttaatggccgaatttcatttt 627
|||||||||||||||||||||||| ||||||||||||||| || | | ||||||||||
Sbjct: 174 taaggtatgcttttgccaatacctc-tttatttcatgattt-atagtcagatttcatttt 117
Query: 628 aaagcttgaaaaaaaaaaagtttgcc 653
|||||| ||||||||| |||||||
Sbjct: 116 taagctttgaaaaaaaaaggtttgcc 91
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,778
Number of Sequences: 1807
Number of extensions: 24778
Number of successful extensions: 2317
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)