BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZG12RM1.SCF screened BAC_end
(998 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1708 1055 0.0
>3x_Contig1708
Length = 19451
Score = 1055 bits (532), Expect = 0.0
Identities = 688/721 (95%), Gaps = 16/721 (2%)
Strand = Plus / Plus
Query: 46 ctttattcattcctggtcaaacttctaccaagttgttgcatgattcaatggttgatttga 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12289 ctttattcattcctggtcaaacttctaccaagttgttgcatgattcaatggttgatttga 12348
Query: 106 gtgcgttgaagaagcctgatatcaagagattctccaagaagaacaacatcagaccttttg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12349 gtgcgttgaagaagcctgatatcaagagattctccaagaagaacaacatcagaccttttg 12408
Query: 166 aagattatgaaccattagagtttttatctgaaaagaatgatacatcgcttatggtgttga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409 aagattatgaaccattagagtttttatctgaaaagaatgatacatcgcttatggtgttga 12468
Query: 226 gcacacattctaagaagagaagaaacaatttgacttttattcgtacgtttgggtataaga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12469 gcacacattctaagaagagaagaaacaatttgacttttattcgtacgtttgggtataaga 12528
Query: 286 tctatgatattatcgagttgcagattgcagaaaactataaacttttgtctgatttcagaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12529 tctatgatattatcgagttgcagattgcagaaaactataaacttttgtctgatttcagaa 12588
Query: 346 aacaaacttttaacgttgggttaaagccaatgttcagtttccaaggtgcagcctttgaac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12589 aacaaacttttaacgttgggttaaagccaatgttcagtttccaaggtgcagcctttgaac 12648
Query: 406 aacatccagtttaccagcatatcaaatcattgttccttgactttttcagaggtcagaata 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12649 aacatccagtttaccagcatatcaaatcattgttccttgactttttcagaggtcagaata 12708
Query: 466 ccactttgcaagatgttgcangtttgcaacatatcatttctatcactgtccaaggtgatt 525
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 12709 ccactttgcaagatgttgcaggtttgcaacatatcatttctatcactgtccaaggtgatt 12768
Query: 526 ttccagacggtgaaccattaccaaatgtttctattcagaagtgtatcacttggaagactt 585
| | ||||||||||||||||||||||| |||||||||| |||||||||||| |||||| |
Sbjct: 12769 tccaagacggtgaaccattaccaaatg-ttctattcag-agtgtatcactt-gaagac-t 12824
Query: 586 tacaagtccgaacaaggtggttagaatgttacctanagtgggaattggaagagtataggg 645
||||||||||||||||||||| |||| |||||||| ||| ||||||||||||| | ||
Sbjct: 12825 tacaagtccgaacaaggtggtaagaa-gttacctagagt-ggaattggaagagatt--gg 12880
Query: 646 tccaagattcgattttccagattcggaagaatttacacttcattcttcagtaattgttca 705
|||||||||||| |||| ||| ||||||||||| ||||| || ||| ||| || || |||
Sbjct: 12881 tccaagattcga-tttcaaga-tcggaagaattcacactcca-tctccag-aaatggtca 12936
Query: 706 agggaagccccattagatacctagacatttgggaagtcagagttgcttaaaaacgttgag 765
| ||||| ||||| ||| ||||||||| || ||||||||||||||| ||| |||||||||
Sbjct: 12937 a-ggaag-cccataagaaacctagacaatt-ggaagtcagagttgc-taagaacgttgag 12992
Query: 766 a 766
|
Sbjct: 12993 a 12993
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9331
Number of Sequences: 1807
Number of extensions: 9331
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 998
length of database: 10,358,551
effective HSP length: 16
effective length of query: 982
effective length of database: 10,329,639
effective search space: 10143705498
effective search space used: 10143705498
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)