BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZH01FM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1786                                                         402   e-112

>3x_Contig1786 
          Length = 33838

 Score =  402 bits (203), Expect = e-112
 Identities = 213/215 (99%), Gaps = 1/215 (0%)
 Strand = Plus / Minus

                                                                         
Query: 87    taaatttggtccatagaaaatcaaacaaatctaagataatcttttttaatcatcatgtat 146
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24298 taaatttggtccatagaaaatcaaacaaatctaagataatcttttttaatcatcatgtat 24239

                                                                         
Query: 147   tatcaatatttagtctccattttcataatactaactttgtaggttcttgtcctttttacg 206
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24238 tatcaatatttagtctccattttcataatactaactttgtaggttcttgtcctttttacg 24179

                                                                         
Query: 207   tgatgttacattttggatgctgtataattcggatttgggtttattccttttttttttttg 266
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24178 tgatgttacattttggatgctgtataattcggatttgggtttattccttttttttttttg 24119

                                                
Query: 267   ttacttcttggagtactttctttttagctcaaaag 301
             |||||||||| ||||||||| ||||||||||||||
Sbjct: 24118 ttacttcttgtagtactttc-ttttagctcaaaag 24085


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,217
Number of Sequences: 1807
Number of extensions: 30217
Number of successful extensions: 413
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)