BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH01RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1144 1358 0.0
>3x_Contig1144
Length = 4618
Score = 1358 bits (685), Expect = 0.0
Identities = 807/840 (96%), Gaps = 7/840 (0%)
Strand = Plus / Minus
Query: 45 cttattcaatattatgtgaaggttggagaatttgataagttcctattgtgttatgtgatt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 cttattcaatattatgtgaaggttggagaatttgataagttcctattgtgttatgtgatt 1216
Query: 105 ttcaaactgggactaattaagggtaagacattaatcttcgttaacaatatcgatagagga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1215 ttcaaactgggactaattaagggtaagacattaatcttcgttaacaatatcgatagagga 1156
Query: 165 tacagactaaagctagttttagaacagtttggtattaaatcttgcattttgaacagtgaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1155 tacagactaaagctagttttagaacagtttggtattaaatcttgcattttgaacagtgaa 1096
Query: 225 ctgccagcaaattcaagacagcatatcgtagaagaattcaacaagaacgtttatcaactg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 ctgccagcaaattcaagacagcatatcgtagaagaattcaacaagaacgtttatcaactg 1036
Query: 285 ttaatagctacagacgattacctgaatatatcaaagaagaagacgaagacttagaatcag 344
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 ttaatagctacagacgata--ctgaatatatcaaagaagaagacgaagacttagaatcag 978
Query: 345 aaaaaactgaggatggtttagttgaggttgtcgatgattccactgttactacgaaagaca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 aaaaaactgaggatggtttagttgaggttgtcgatgattccactgttactacgaaagaca 918
Query: 405 atgcaaagaaacaaaagaagccaaagctaaacgtggagaaagacaaagaatatggtgtat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 atgcaaagaaacaaaagaagccaaagctaaacgtggagaaagacaaagaatatggtgtat 858
Query: 465 ctcgcggtgtggacttcaaaaatgttgcctgtgtattaaactttgatctaccaaccactg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ctcgcggtgtggacttcaaaaatgttgcctgtgtattaaactttgatctaccaaccactg 798
Query: 525 caaaatcgtatgtacatagaattggtagaacagctcgtgcagggaagtcaggaatttcta 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 caaaatcgtatgtacatagaattggtagaacagctcgtgcagggaagtcaggaatttcta 738
Query: 585 tgtcttttgttgatcctttgaa-gaattcgggaagcat-aaccatctatgatcaagagtg 642
| |||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 737 tttcttttgttgttcctttgaaggaattcgggaagcataaaccatctatgatcaagagtg 678
Query: 643 cttagaatgatgaaaagatactatgcagaattattaaacaacaggctaaattatgctttt 702
|| |||| ||||||||||||||| |||||||||| |||||||||||||||||| || |||
Sbjct: 677 ctaagaaggatgaaaagatactaggcagaattataaaacaacaggctaaattaggc-ttt 619
Query: 703 gaactacagcctttacactttgatatcaaacaggtcgaaggtttccgttatataatggaa 762
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 618 gaactacagccttacaactttgatatcaaacaggtcgaaggtttccgttatagaatggaa 559
Query: 763 gacggtttccgtgcagttacttaagttgctattataggagcaaggattaaggagtttaaa 822
||||||||||||||||| ||| | |||||||||| || |||||||| |||||||| |||
Sbjct: 558 gacggtttccgtgcagtaactcaggttgctattagagaggcaaggataaaggagttaaaa 499
Query: 823 cagggaactttgggcaggtgagaaacctaagaaacattttggaaaagaatcctcatgact 882
|| |||||||| |||| ||||||||| |||| ||||||| ||| |||||||||||||||
Sbjct: 498 ca-ggaacttttggcaagtgagaaactaaagagacatttt-gaagagaatcctcatgact 441
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7858
Number of Sequences: 1807
Number of extensions: 7858
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)