BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH02FM1.SCF screened BAC_end
(886 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1108 1160 0.0
>3x_Contig1108
Length = 6240
Score = 1160 bits (585), Expect = 0.0
Identities = 652/673 (96%), Gaps = 1/673 (0%)
Strand = Plus / Minus
Query: 86 tgaggcctcaatatatataaaaaaaccataccaactacaagtaagcaatttagcagaata 145
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5372 tgaggcttctatatatattttaaaaccataccaactacaagtaagcaatttagcagaata 5313
Query: 146 agtgtatattgtattggattgaacatgcataactgaaagcagataccaaatttccaccgc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5312 agtgtatattgtattggattgaacatgcataactgaaagcagataccaaatttccaccgc 5253
Query: 206 gtttgaagatcatgtcgccaatattaatagaataagcctaggccatacaaaaagggtatt 265
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5252 gtttgaagatcaaatcgccaatattaatagaataagcctaggccatacaaaaagggtatt 5193
Query: 266 gaaaactcagttcacagaaatacccaacatagtacagtgactctgccaaaaaaagttact 325
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5192 gaaaactcagttcagagaaatacccaacatagtacagtgactctgccaaaaaaagttact 5133
Query: 326 cagcaataattaatacttgaccagaaacaaaagataccgtaagagaagaaacggtaagaa 385
|||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5132 cagcggtgattaatacttgaccagaaacgaaagataccgtaagagaagaaacggtaagaa 5073
Query: 386 actagctttctatggcaagaacatgggatagagtttaaggtttacatttacgagtggatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5072 actagctttctatggcaagaacatgggatagagtttaaggtttacatttacgagtggatg 5013
Query: 446 gtttatttcgagacagaatcgtgtttgtagagaatgtactgcaaacaaaaaccagcagaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5012 gtttatttcgagacagaatcgtgtttgtagagaatgtactgcaaacaaaaaccagcagaa 4953
Query: 506 gtaaaagtcaaacccttcatgtcgtcgaagcaagttgaagaattaaaagaacataaagaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4952 gtaaaagtcaaacccttcatgtcgtcgaagcaagttgaagaattaaaagaacaaaaagaa 4893
Query: 566 caaaaaaaactcacacagtataatgtcccaagttgtgagatcagccgtgcagcacaattg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4892 caaaaaaaactcacacagtataatgtcccaagttgtgagatcagccgtgcagcacaattg 4833
Query: 626 aatgtctttattgaaaagatccccctctccatccgataagtagtatgttaattatatctg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4832 aatgtctttattgaaaagatccccctctccatccgataagtagtatgttaattatatctg 4773
Query: 686 ctgcaccccactatcatacttcttgcagattgat-atgatttaactcttcaggatttcca 744
|||||||||||||||||||| || |||||| ||| |||||| |||||| |||||||||||
Sbjct: 4772 ctgcaccccactatcatactcctcgcagatcgataatgattcaactctccaggatttcca 4713
Query: 745 tttttttttttgc 757
| |||||| ||||
Sbjct: 4712 tattttttcttgc 4700
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,364
Number of Sequences: 1807
Number of extensions: 12364
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)