BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZH02RM1.SCF screened BAC_end (873 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1076 1243 0.0 >3x_Contig1076 Length = 4245 Score = 1243 bits (627), Expect = 0.0 Identities = 785/823 (95%), Gaps = 13/823 (1%) Strand = Plus / Plus Query: 48 tcaggtttaccatgtttgtgttgaacatttccatgacccccatactgaggagcattacta 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3350 tcaggtttaccatgtttgtgttgaacatttccatgacccccatactgaggagcattacta 3409 Query: 108 tcaggaatgcgtatgcaatataatcttggaaaaagtttctgatcctcttataaaactcgc 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3410 tcaggaatgcgtatgcaatataatcttggaaaaagtttctgatcctcttataaaactcgc 3469 Query: 168 ctttatttccactagcaagtaatagcgtggtttcatcttcaagtacaatatcatccgctc 227 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3470 ctttatttccactagcaagtaatagcgtggtttcatcttcaagtacaatagcatccgctc 3529 Query: 228 ttgctgatgcatgcgatgctgatggagattgagaaccacgaagcttaatgatagaaatcg 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3530 ttgctgatgcatgcgatgctgatggagattgagaaccacgaagcttaatgatagaaatcg 3589 Query: 288 tactagtggaaatccatgtcaacaaaaatacaaacgtgtagaagacagcgaacgatttaa 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3590 tactagtggaaatccatgtcaacaaaaatacaaacgtgtagaagacagcgaacgatttaa 3649 Query: 348 agacaacagcaagatctaggtaaccgtcctctttagaatggaaccatggtaatttaatta 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3650 agacaacagcaagatctaggtaaccgtcctctttagaatggaaccatggtaatttaatta 3709 Query: 408 cctgcaacccaattacggaggataatccaaaacatgtcgtggggaaactgattgacaata 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3710 cctgcaacccaattacggaggataatccaaaacatgtcgtggggaaactgattgacaata 3769 Query: 468 gttttgtatcggggtacagctttgcacaagtaattaaagcgcataagtacagcgaactgg 527 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 3770 gttttgtatcggggtacagctttgcacaagtaattaaagcgcaaaagtacagcgaactgg 3829 Query: 528 tagcgattccaacaattgcaaatgccactacggagagggcaaaacatggatcggatccca 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3830 tagcgattccaacaattgcaaatgccactacggagagggcaaaacatggatcggatccca 3889 Query: 588 actggaaaacancagataggtataaatagctgggaacgaaaccaatgaaagatagccaac 647 ||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 3890 actggaaaacacaagataggtataaatagctgggaacgaaaccaatgaaggaaagccaac 3949 Query: 648 ttaatatcacatggccgtgagaaatcgat-atataccntataatggaggagtcaaat-ag 705 ||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||| || Sbjct: 3950 ttaatatcacagggccgtgagaatcggataatatacctaataatggaggagtcaaataag 4009 Query: 706 ctnctaaa-tccctgcagcat-aagtaaatt-acgtcagtggaagagtat-ctaacctt- 760 || ||||| |||||||||||| ||||||||| |||||| ||||||||| |||||||| Sbjct: 4010 ctcctaaattccctgcagcataaagtaaattaacgtcaagtgaagagtatcctaacctta 4069 Query: 761 atttccacggtactgcatttacgaaattcttagaaaaa--cccagc-ggaatggatgag- 816 ||| |||||||||||||| ||| || || |||||||| |||||| | |||||||||| Sbjct: 4070 attcccacggtactgcatataccgaaatcatagaaaaacgcccagcagaaatggatgaga 4129 Query: 817 ataaagatat-atgaatgttg-attttgaatggtggaccattc 857 ||||||| || |||||||||| ||| ||||||||||||||||| Sbjct: 4130 ataaagaaataatgaatgttgaattatgaatggtggaccattc 4172 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5742 Number of Sequences: 1807 Number of extensions: 5742 Number of successful extensions: 47 Number of sequences better than 1.0e-20: 1 length of query: 873 length of database: 10,358,551 effective HSP length: 16 effective length of query: 857 effective length of database: 10,329,639 effective search space: 8852500623 effective search space used: 8852500623 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)