BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZH02RM1.SCF screened BAC_end
         (873 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1076                                                        1243   0.0  

>3x_Contig1076 
          Length = 4245

 Score = 1243 bits (627), Expect = 0.0
 Identities = 785/823 (95%), Gaps = 13/823 (1%)
 Strand = Plus / Plus

                                                                        
Query: 48   tcaggtttaccatgtttgtgttgaacatttccatgacccccatactgaggagcattacta 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3350 tcaggtttaccatgtttgtgttgaacatttccatgacccccatactgaggagcattacta 3409

                                                                        
Query: 108  tcaggaatgcgtatgcaatataatcttggaaaaagtttctgatcctcttataaaactcgc 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410 tcaggaatgcgtatgcaatataatcttggaaaaagtttctgatcctcttataaaactcgc 3469

                                                                        
Query: 168  ctttatttccactagcaagtaatagcgtggtttcatcttcaagtacaatatcatccgctc 227
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3470 ctttatttccactagcaagtaatagcgtggtttcatcttcaagtacaatagcatccgctc 3529

                                                                        
Query: 228  ttgctgatgcatgcgatgctgatggagattgagaaccacgaagcttaatgatagaaatcg 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3530 ttgctgatgcatgcgatgctgatggagattgagaaccacgaagcttaatgatagaaatcg 3589

                                                                        
Query: 288  tactagtggaaatccatgtcaacaaaaatacaaacgtgtagaagacagcgaacgatttaa 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3590 tactagtggaaatccatgtcaacaaaaatacaaacgtgtagaagacagcgaacgatttaa 3649

                                                                        
Query: 348  agacaacagcaagatctaggtaaccgtcctctttagaatggaaccatggtaatttaatta 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3650 agacaacagcaagatctaggtaaccgtcctctttagaatggaaccatggtaatttaatta 3709

                                                                        
Query: 408  cctgcaacccaattacggaggataatccaaaacatgtcgtggggaaactgattgacaata 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3710 cctgcaacccaattacggaggataatccaaaacatgtcgtggggaaactgattgacaata 3769

                                                                        
Query: 468  gttttgtatcggggtacagctttgcacaagtaattaaagcgcataagtacagcgaactgg 527
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3770 gttttgtatcggggtacagctttgcacaagtaattaaagcgcaaaagtacagcgaactgg 3829

                                                                        
Query: 528  tagcgattccaacaattgcaaatgccactacggagagggcaaaacatggatcggatccca 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3830 tagcgattccaacaattgcaaatgccactacggagagggcaaaacatggatcggatccca 3889

                                                                        
Query: 588  actggaaaacancagataggtataaatagctgggaacgaaaccaatgaaagatagccaac 647
            |||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 3890 actggaaaacacaagataggtataaatagctgggaacgaaaccaatgaaggaaagccaac 3949

                                                                        
Query: 648  ttaatatcacatggccgtgagaaatcgat-atataccntataatggaggagtcaaat-ag 705
            ||||||||||| |||||||||||   ||| |||||||  |||||||||||||||||| ||
Sbjct: 3950 ttaatatcacagggccgtgagaatcggataatatacctaataatggaggagtcaaataag 4009

                                                                        
Query: 706  ctnctaaa-tccctgcagcat-aagtaaatt-acgtcagtggaagagtat-ctaacctt- 760
            || ||||| |||||||||||| ||||||||| ||||||   ||||||||| |||||||| 
Sbjct: 4010 ctcctaaattccctgcagcataaagtaaattaacgtcaagtgaagagtatcctaacctta 4069

                                                                        
Query: 761  atttccacggtactgcatttacgaaattcttagaaaaa--cccagc-ggaatggatgag- 816
            ||| |||||||||||||| |||  || || ||||||||  |||||| | |||||||||| 
Sbjct: 4070 attcccacggtactgcatataccgaaatcatagaaaaacgcccagcagaaatggatgaga 4129

                                                       
Query: 817  ataaagatat-atgaatgttg-attttgaatggtggaccattc 857
            ||||||| || |||||||||| ||| |||||||||||||||||
Sbjct: 4130 ataaagaaataatgaatgttgaattatgaatggtggaccattc 4172


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5742
Number of Sequences: 1807
Number of extensions: 5742
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)