BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH03FM1.SCF screened BAC_end
(979 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1253 0.0
>3x_Contig1686
Length = 15382
Score = 1253 bits (632), Expect = 0.0
Identities = 777/822 (94%), Gaps = 3/822 (0%)
Strand = Plus / Minus
Query: 86 cgaccaaagtaaccttaatttccttggagatttcagggatccatttagacaaatcttggt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13541 cgaccaaagtaaccttaatttccttggagatttcagggatccatttagacaaatcttggt 13482
Query: 146 caacgtaatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13481 caacgtaatcttgcaattcagcagcaaattcaacaccggttggaccaccaccaacaacaa 13422
Query: 206 cgaaactcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagccttttcaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13421 cgaaactcaacaatctcttgcgttcagggtcgttagcagacaaagtagcagccttttcaa 13362
Query: 266 tgttattcatgattttagttctaatatcttgagcgtccggaatttccttcaagaaggagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13361 tgttattcatgattttagttctaatatcttgagcgtccggaatttccttcaagaaggagg 13302
Query: 326 cgttttcgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacgacca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13301 cgttttcgaagacacctgggataccgaaggtagttggttgagcaccaacaccgacgacca 13242
Query: 386 aataatcatagttcaaatcaagttcgtagtcatggtctttagtagcagattttattctaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13241 aataatcatagttcaaatcaagttcgtagtcatggtctttagtagcagattttattctaa 13182
Query: 446 cggtcttggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttcaccag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13181 cggtcttggcaacaggatcgatgtccttggcttcagcctcatagtaatgaacttcaccag 13122
Query: 506 gtgaagatctggtgatggatctgacaggttcgacaatggactttaactcaacggtgccga 565
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13121 gtgaagatctggtgatggatctgacaggttcgacaatggacttcaactcaacggtgccga 13062
Query: 566 ctggagtagatggtagcattggagtgaacaagatgtagtttcttggagatacaacannta 625
|||||||||| ||||||| |||||||||||||| ||||||||||||||| |||||| |
Sbjct: 13061 ctggagtagaaggtagcaatggagtgaacaagaagtagtttcttggagaaacaacaataa 13002
Query: 626 cgttatacatagaaatattccaatgtttcaataaagacacagaatccccaccagtaccca 685
||||||||| |||| ||| | ||||||||||||| ||||||||| ||| |||||||||||
Sbjct: 13001 cgttatacaaagaagtatccaaatgtttcaataaggacacagaaccccaaccagtaccca 12942
Query: 686 aaacgacaaaggttttcctttgaggacccgttagcgaaagtggcagcttgaggaatttga 745
||||||||| |||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct: 12941 aaacgacaagggttttccttgga-gaaccgttagcgaaagtggcagcttgaggaatttga 12883
Query: 746 gggagtggattagctttccttgtcaattcattaggaacgttaccagtaccaggcaacaaa 805
|| |||||||||||| ||| |||||||| | ||||| ||||||||||| |||||||
Sbjct: 12882 ggaggtggattagcttccctgtacaattcataggaaacgtaaccagtaccagccaacaaa 12823
Query: 806 gccgctagagatactttcaaagggttagaaacacctctttttgctaccgaagcctttact 865
||||||||||| |||||||||| | ||||||| ||||| |||||| ||| | |||||||
Sbjct: 12822 gccgctagagaaactttcaaagtggtagaaaccactcttcttgctagcgatggctttact 12763
Query: 866 gtggacaacagttttttgggcaaatataaaaaattgattttg 907
| ||||||||| ||||| ||| ||||| | ||||||||||||
Sbjct: 12762 g-ggacaacagcttttt-ggccaatattagaaattgattttg 12723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7265
Number of Sequences: 1807
Number of extensions: 7265
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 979
length of database: 10,358,551
effective HSP length: 16
effective length of query: 963
effective length of database: 10,329,639
effective search space: 9947442357
effective search space used: 9947442357
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)