BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH03RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig205 1217 0.0
>3x_Contig205
Length = 1544
Score = 1217 bits (614), Expect = 0.0
Identities = 776/815 (95%), Gaps = 13/815 (1%)
Strand = Plus / Minus
Query: 43 cttcattgtataaagaggtaccctgtcaagagtgatcacgcattgtgtgtcatatccagt 102
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 cttcattgtataaagag-taccctgtcaagagtgatcacgcattgtgtgtcatatccagt 1267
Query: 103 gccaattgatggtcttgtgttcgcttttttttatgagtcactcttactgatctctcaata 162
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 1266 gccaattgatggtcttgtgttcgcttttttttatgagtcactcttactggtctgtcaata 1207
Query: 163 ggatggtgcatcttatcaaaaaattgctctctgattaggaattaattccgtgttctatcc 222
|||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||
Sbjct: 1206 ggatggtgcatcttatgagaaaattgctctctgattaggaattaattccgtgttcgaacc 1147
Query: 223 ccacttggaccactttttgaaaagacaatgatgcaatgttagctatatgataatattagt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 ccacttggaccactttttgaaaagacaatgatgcaatgttagctatatgataatattagt 1087
Query: 283 ccgtatctatataatgatgtgtttaaagggtaccgggctataagtatctcttgcataggt 342
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1086 ccgtatctatataatgatgtgtttaaagggtaccgggctataagtatgtcttgcataggt 1027
Query: 343 agaaacaccatttttcgaatttgtatctccatttaaacaaaatgtttctgttgtgtagat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 agaaacaccatttttcgaatttgtatctccatttaaacaaaatgtttctgttgtgtagat 967
Query: 403 tgacttctatatcgttctgatcgaatgtgaacttcccactgcgcaatagttgttgttgga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tgacttctatatcgttctgatcgaatgtgaacttcccactgcgcaatagttgttgttgga 907
Query: 463 atgcaattatgatgaaattgaaatagaatctgactgctagtggaactaaagttagcaata 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 atgcaattatgatgaaattgaaatagaatctgactgctagtggaactaaagttagcaata 847
Query: 523 tgatgaggaaaaattcatagccgctagaagcactcttagaagtatctactttagttgaga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tgatgaggaaaaattcatagccgctagaagcactcttagaagtatctactttagttgaga 787
Query: 583 tcgtggatgtggttccctcatgagctggtccaagtgcagttcccgcgctcttc-agtccg 641
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 786 tcgtggatgtggttccctcatgagctggtccaagtgcggttcccgcgctcttcaagtccg 727
Query: 642 tatcgtcagtggagccctcctggctgaa-cacacagcagtgaacccatagcagtaaatgc 700
|| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 726 taacgtcagtggagccctcctggctgaaccacacagcagtgaaccataagcagtaaatgc 667
Query: 701 atctatcaatntgtgttcacactgnatcac-aaagttatcgtggacattaagaggatatt 759
| ||| |||| ||||| ||||||| | ||| ||||| | |||||||||||||||||||||
Sbjct: 666 aactaacaat-tgtgtccacactgaa-cacaaaagtaaccgtggacattaagaggatatt 609
Query: 760 ggnnnctataaac-tgnnctattcctg-aatgaata-cactagacag-aaattgaccaga 815
|| ||||||| || |||||||| |||||||| |||||||||| ||||||||||||
Sbjct: 608 gggct-tataaacttgtcttattcctgaaatgaataccactagacagaaaattgaccaga 550
Query: 816 tgt-aaaagttcattgcac-aagtctaacggntgt 848
||| |||||| |||||||| ||||||||||| |||
Sbjct: 549 tgtaaaaagtccattgcacaaagtctaacgggtgt 515
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6027
Number of Sequences: 1807
Number of extensions: 6027
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)