BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH04FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 900 0.0
>3x_Contig1642
Length = 16641
Score = 900 bits (454), Expect = 0.0
Identities = 584/618 (94%), Gaps = 7/618 (1%)
Strand = Plus / Plus
Query: 89 tgtttttttatagatgttttaatagtcaataatgcaacgatcaatgaacttaggattcag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2604 tgtttttttatagatgttttaatagtcaataatgcaacgatcaatgaacttaggattcag 2663
Query: 149 tacttttctttgttaagtaaagcagatacaagtagcagctaaaatttatcattatcaaag 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2664 tacttttctttgttaagtaaagcagatacaagtagcagctaaaatttatcattatcaaag 2723
Query: 209 tatttattcaacctatatacttttcattaacaacttgcccctttacattttattcgaaag 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2724 tatttattcaacctatatacttttcattaacaacttgcccctttacattttattcgaaag 2783
Query: 269 agtgattccatgtcttatatggcaataggatggatgaatcgatcgacaatttccctccag 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2784 agtgattccatgtcttatatggcaataggatggatgaatcgatcgacaatttccctccag 2843
Query: 329 cgaagtgcattgctgaaagtaccgtaagaccatgtcaaatttggagccccttggttgtat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2844 cgaagtgcattgctgaaagtaccgtaagaccatgtcaaatttggagccccttggttgtat 2903
Query: 389 ccatgatatttgttgaactgttcgctcatcgatccgtcgttacttacatgctcgttaact 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2904 ccatgatatttgttgaactgttcgctcatcgatccgtcgttacttacatgctcgttaact 2963
Query: 449 ttgcttaggaatgaatcaccggaatttgaatattgtgtacaacgtttggttgaacgctaa 508
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 2964 ttgcttaggaatgaatcacc-gtatttgaatattgtgtacaacgtttggttgaacgctaa 3022
Query: 509 tgtattatatggtatcaagatcagcgaattctttat-tttccaaattcg-agaaattatt 566
||||||||||||||||||||||||||||| ||| || || ||||||||| |||| ||| |
Sbjct: 3023 tgtattatatggtatcaagatcagcgaatccttcatattcccaaattcgaagaatttagt 3082
Query: 567 ccagaccttggttggt-tcggatcaaggagt-aaggtttcttatcgggatac-ttttatt 623
||||| |||| | | | ||||||||| |||| ||||||||| |||| ||||| |||||||
Sbjct: 3083 ccagaacttgttcgatatcggatcaatgagtaaaggtttctcatcgtgatacattttatt 3142
Query: 624 ggctaa-ttggaaatcaattcgggcggagttaacggtgggaataaccagggattcccttt 682
| |||| ||| |||||||||||| | ||||||| || || ||||||||||| ||||
Sbjct: 3143 gactaatttgtaaatcaattcggcagaggttaacgttgagataaaccagggattaccttc 3202
Query: 683 cgagatggcaattccatc 700
|||||| ||||||||||
Sbjct: 3203 agagatgtcaattccatc 3220
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7060
Number of Sequences: 1807
Number of extensions: 7060
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)