BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH04RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1552 1045 0.0
>3x_Contig1552
Length = 11268
Score = 1045 bits (527), Expect = 0.0
Identities = 593/611 (97%), Gaps = 3/611 (0%)
Strand = Plus / Minus
Query: 44 gctttagtacttgaatggattctctaatttcatccagtttcgaggagacttcttcaagtt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9423 gctttagtacttgaatggattctctaatttcatccagtttcgaggagacttcttcaagtt 9364
Query: 104 tcctctttaccatagttgagatatgatgctgactccaagaaagtttcctgttggaatgat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9363 tcctctttaccatagttgagatatgatgctgactccaagaaagtttcctgttggaatgat 9304
Query: 164 tagatgtcctgttggagagttcaagaatgtcatattggcgttttagtgtcgtgttttgca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 9303 tagatgtcctgttggagagttcaagaatgtcatattggcgttttagtgtcgtgattagca 9244
Query: 224 tgtcgaaattagttaccgcagaagaactatctgctaacctttggtaagactgtttcaatt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9243 tgtcgaaattagttaccgcagaagaactatctgctaacctttggtaagactgtttcaatt 9184
Query: 284 cgtagctttgtttagccttggaagtaaggatatccaaaagagtggccgcctcaccaagtc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9183 cgtagctttgtttagccttggaagtaaggatatccaaaagagtggccgcctcaccaagtc 9124
Query: 344 tccaggatgagacaattgggacagttttctcagtacgtttgaataaattttgggaatggt 403
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9123 tccaggaggagacaattgggacagttttctcagtacgtttgaataaattttgggaatggt 9064
Query: 404 cacctataaacttcccaatgttgtcgatatttgagcgtaacacttgaatgtttgctaaaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9063 cacctataaacttcccaatgttgtcgatatttgagcgtaacacttgaatgtttgctaaaa 9004
Query: 464 cttgagcattttgttttttaacggcctgtacaacttcatcggaagatattggactgaatt 523
||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 9003 cttgagcatttgttttttcaacggcctgtacaacttcatcggaagatattgtactgaatt 8944
Query: 524 ctttaagttcagcagtggaattagaagcactaggcatttcaggaagatacttttcagcta 583
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 8943 ctttaagttcagcagtggaatagaaagcactaggcatttcaggaagatacctttcagcta 8884
Query: 584 tttattgctcatcattttcaaa-gcctgtaaagt-aagtctgccctttcttta-ttagac 640
| |||||||||||||||||||| || |||||||| |||||||| ||||||||| | ||||
Sbjct: 8883 tatattgctcatcattttcaaaggcttgtaaagtaaagtctgcactttctttagtaagac 8824
Query: 641 tttgagtggaa 651
|||||||||||
Sbjct: 8823 tttgagtggaa 8813
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7698
Number of Sequences: 1807
Number of extensions: 7698
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)