BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH06RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1388 0.0
>3x_Contig1738
Length = 21411
Score = 1388 bits (700), Expect = 0.0
Identities = 812/839 (96%), Gaps = 9/839 (1%)
Strand = Plus / Plus
Query: 43 cttgagcagcacctttgaaaggagcaaaagaaaccaactcaactaacttagtgaaagagc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7437 cttgagcagcacctttgaaaggagcaaaagaaaccaactcaactaacttagtgaaagagc 7496
Query: 103 cgaaatcattgatctgttgctggacttccttcaaacgagatccgatatcatcctgttgca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7497 cgaaatcattgatctgttgctggacttccttcaaacgagatccgatatcatcctgttgca 7556
Query: 163 atttcactttgaagataccatacccggtaggttcttcgaacaaaagatattcaataggag 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7557 atttcactttgaagataccatacccggtaggttcttcgaacaaaagatattcaataggag 7616
Query: 223 ccattatttaattctctgatcaataaagtttcctcgctaccgtaaaatctctttgatctg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7617 ccattatttaattctctgatcaataaagtttcctcgctaccgtaaaatctctttgatctg 7676
Query: 283 gactcttcaacacacactaacttcggaatgaatgaacaaaactcaagataatacagacaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7677 gactcttcaacacacactaacttcggaatgaatgaacaaaactcaagataatacagacaa 7736
Query: 343 gtattaattgaaatatcgctgtgcacataacacaatatacaatatattcactggtcagaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7737 gtattaattgaaatatcgctgtgcacataacacaatatacaatatattcactggtcagaa 7796
Query: 403 agctcatctctctttattggcttcgaaatgaaaattttccaaacaaaaaaaaaagagcga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7797 agctcatctctctttattggcttcgaaatgaaaattttccaaacaaaaaaaaaagagcga 7856
Query: 463 tgagcttgaaaaagaaaagcagaatgggaaatatattttacttacccggccgcggccggg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7857 tgagcttgaaaaagaaaagcagaatgggaaatatattttacttacccggccgcggccggg 7916
Query: 523 taagttatacacgtgatcgaatgtattacccggatatagaataattgacaaaatcacgtg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7917 taagttatacacgtgatcgaatgtattacccggatatagaataattgacaaaatcacgtg 7976
Query: 583 acctggaattttcttgtctttccaaaaacataacaacgaaaggatactcgaaattgtatt 642
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 7977 acctggaattttcttgtctttccaaaaacaaaacaacgaaaggaaactcgaaattgtatt 8036
Query: 643 caatgaattcaattgacacttgactatcactacttttcagatgaaatat-antcccttgn 701
||||||||||||||||||||||||||||||||| ||||||| ||||| | |||||||
Sbjct: 8037 caatgaattcaattgacacttgactatcactac-tttcagaatgaatataattcccttgt 8095
Query: 702 tnntagttttattttagcgtgatttctct-ccctgatatcaa-ggtcaaacggtaac-tt 758
| ||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct: 8096 tttaggttttatttaggcgtgatttctctcccctgatatcaagggtcaaacggtaacttt 8155
Query: 759 attggtacatacggatggacgatcagtttttgttcccggacgaagatgatccaatgaatt 818
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8156 attggtacatacggatggacgatcagtttttgttcccggacgagagtgatccaatgaatt 8215
Query: 819 ctggcgatgg-cagcttttcggtc-agga-gttcnaacggggatga-tacctttccttc 873
|||||||||| ||||||||||||| |||| |||| ||||| ||||| ||||||||||||
Sbjct: 8216 ctggcgatggccagcttttcggtcaaggaggttcgaacggtgatgagtacctttccttc 8274
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9720
Number of Sequences: 1807
Number of extensions: 9720
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)