BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH07FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig715 1100 0.0
>3x_Contig715
Length = 2727
Score = 1100 bits (555), Expect = 0.0
Identities = 632/655 (96%), Gaps = 2/655 (0%)
Strand = Plus / Minus
Query: 84 taggaggccgtcaatttagttgaatctagcacagtgtgtctttgagctctcaagaatact 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1384 taggaggccgtcaatttagttgaatctagcacagtgtgtctttgagctctcaagaatact 1325
Query: 144 gttttattttcaaacgtttcaccgcttccaattaacctgcaataatgaaggtatgcgaat 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 gttttattttcaaacgtttcaccgcttccaattaacctgcaataatgaaggtatgcgaat 1265
Query: 204 aatcgtgttttaatatagttctgacatattcataatgaacaaacggaatactaaccttat 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 aatcgtgttttaatatagttctgacatattcataatgaacaaacggaatactaaccttat 1205
Query: 264 attaacggcatgtatgtatattttttgcatcatgtgttacttaacatcttttaaagttta 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 attaacggcatgtatgtatattttttgcatcatgtgttacttaacatcttttaaagttta 1145
Query: 324 tcgatgaatttgatttagaggttgttaaccaggctcttaatttcgagacctcggactgca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 tcgatgaatttgatttagaggttgttaaccaggctcttaatttcgagacctcggactgca 1085
Query: 384 gtatcacaggtggttgcgacattttcacgacaaagcccgtagcttcagataagaagcttt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 gtatcacaggtggttgcgacattttcacgacaaagcccgtagcttcagataagaagcttt 1025
Query: 444 ataagaccatagatcgtcatttggagtccttacttcaagatagtgagtcgcttactgctg 503
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1024 ataagaccatagatcgtcatttggagtccttacttcaagaaagtgagtcgcttactgctg 965
Query: 504 cagctcacaggatgcattcttttgacgaatagaacagaactatcgatgaaaatgtgcaag 563
|||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 964 cagctcacaggaggcaatcttttgacgaaaagaacagaactatcgatgaaaatgtgcaag 905
Query: 564 aagcacagagcccaa-ccctaattctttctgggaacaaaagataatgatgtctgttagcg 622
| ||||||||||| ||||||||| |||||||||||||||| || ||||||||||||||
Sbjct: 904 agcaacagagcccaaaccctaattcattctgggaacaaaagagaaggatgtctgttagcg 845
Query: 623 agatttcgagtgggacaaatagttcggcacctatattaaaatctattaggt-gaacgacc 681
||| |||||||||||||||||||||| |||||||| ||||||||| || || ||||||||
Sbjct: 844 agaattcgagtgggacaaatagttcgtcacctataataaaatctaataagttgaacgacc 785
Query: 682 caaattttgaggaatttgtgctggcaactgacagtacaatttttgtcacgaatgg 736
|||||| ||||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct: 784 aaaatttgaaggaattcgtgctgtcaactgacagtacaaattttgtcacgaatgg 730
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6638
Number of Sequences: 1807
Number of extensions: 6638
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)