BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH07RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig340 1225 0.0
>3x_Contig340
Length = 1690
Score = 1225 bits (618), Expect = 0.0
Identities = 717/742 (96%), Gaps = 6/742 (0%)
Strand = Plus / Minus
Query: 74 atcgatttgtttcgaagacaatattattattagatggcatctacttaaaagagttttgga 133
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 atcgatttgtttcgaagaca-tattattattagatggcatctacttaaaagagttttgga 1632
Query: 134 taaataacagcaatgatacaaaagataataaaagggaaaagtaatctttaagtttaaggt 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1631 taaataacagcaatgatacaaaagataataaaagggaaaagtaatctttaagtttaaggt 1572
Query: 194 attgaatgataaacaagccaggaaggattatattagaagtatttgaatagaaaacttgag 253
||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 1571 attgaatgataaacaagccaggaaggagtagaaaagaagtatttgaatagaaaacttgag 1512
Query: 254 attaaatcataatatggaagaaaagggaactcagaataggaaaagaaagaaaaagaagga 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1511 attaaatcataatatggaagaaaagggaactcagaataggaaaagaaagaaaaagaagga 1452
Query: 314 gaaggccatgtaataggaaatgcgtaaagaaagaatgaaaagaatgcagtttaaggtgta 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1451 gaaggccatgtaataggaaatgcgtaaagaaagaatgaaaagaatgcagtttaaggtgta 1392
Query: 374 attagactaggaatcaattatcaaaatgacaccatttgctgccacgtccactgttttaac 433
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1391 attagactag-aatcaattatcaaaatgacaccatttgctgccacgtccactgttttaac 1333
Query: 434 tagtttgaagtccatgtttgaagctgacgcaacgaaatattcgttattctgtcttttcaa 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 tagtttgaagtccatgtttgaagctgacgcaacgaaatattcgttattctgtcttttcaa 1273
Query: 494 cacaatgtcacccttttcagaggtgtctgcctcgctatgtaaccagatttcgtctgattc 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 cacaatgtcacccttttcagaggtgtctgcctcgctatgtaaccagatttcgtctgattc 1213
Query: 554 caaatcgaaatcatcagaatgtgccactatatgagatttcacaaagtgtgctacattctc 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 caaatcgaaatcatcagaatgtgccactatatgagatttcacaaagtgtgctacattctc 1153
Query: 614 ttttatagcatcgtcgatttgttttggttctgcattcgattgttccatggcatcgata-t 672
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1152 ttttatagcatcgtcgatttgttttggttctgcattcgattgttccatggcatcgatatt 1093
Query: 673 atttgggaactggcaa-gtttcatcgaaag-tttgaaaatgcatcggttcttggtgcaat 730
|||||||||||| ||| ||||||||||||| ||||||| |||||| | ||||||||||
Sbjct: 1092 atttgggaactgccaaggtttcatcgaaagttttgaaatggcatcgttcgttggtgcaat 1033
Query: 731 gacgattaacttttgcaatctgtccctccattgggctacaaccttcgtggacatcacggg 790
||||||||||| |||| |||||||| |||||||||||||||| ||| ||||||||||
Sbjct: 1032 gacgattaactcttgcgatctgtcctcccattgggctacaacc-tcggtgacatcacggc 974
Query: 791 cattctcggaaaataaactgat 812
||| |||||| |||||||||||
Sbjct: 973 catactcggagaataaactgat 952
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9704
Number of Sequences: 1807
Number of extensions: 9704
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)