BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC40ZH08FM1.SCF screened BAC_end
         (905 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1781                                                        1225   0.0  

>3x_Contig1781 
          Length = 20717

 Score = 1225 bits (618), Expect = 0.0
 Identities = 641/646 (99%), Gaps = 2/646 (0%)
 Strand = Plus / Minus

                                                                         
Query: 89    ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 148
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11817 ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 11758

                                                                         
Query: 149   cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 208
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11757 cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 11698

                                                                         
Query: 209   cgttggttgcgatcacagaaagagtattttcttgaagagatgatgatctgtctattatgg 268
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11697 cgttggttgcgatcacagaaagagtattttcttgaagagatgatgatctgtctattatgg 11638

                                                                         
Query: 269   caggaaagatagcaggttgcaattctgttacctcaacttatatagtcactatatatatat 328
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11637 caggaaagatagcaggttgcaattctgttacctcaacttatatagtcactatatatatat 11578

                                                                         
Query: 329   atatatatatattacaaaagtcagtaaatcatcaaatcaacaagagtagtaccagtagta 388
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11577 atatatatatattacaaaagtcagtaaatcatcaaatcaacaagagtagtaccagtagta 11518

                                                                         
Query: 389   gcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtgc 448
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11517 gcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtgc 11458

                                                                         
Query: 449   cattgagatggaattttacaggttccggttcaccaatgtgttttgcgaaattccattgga 508
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11457 cattgagatggaattttacaggttccggttcaccaatgtgttttgcgaaattccattgga 11398

                                                                         
Query: 509   atttcgacagccgatgtacaatcgaaacggcaaagctagacagccagacagccagacggt 568
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 11397 atttcgacagccgaggtacaatcgaaacggcaaagctagacagccagacagccagacggg 11338

                                                                         
Query: 569   gggaccactgggtct-gggacaacccaccatctattagtcattctacaaactgaatgaag 627
             ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11337 gggaccact-ggtctggggacaacccaccatctattagtcattctacaaactgaatgaag 11279

                                                                         
Query: 628   ctcgatgaggagggaaccgagttccgataaagacttgaagacatgtatgggatagtcagt 687
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11278 ctcgatgaggagggaactgagttccgataaagacttgaagacatgtatgggatagtcagt 11219

                                                           
Query: 688   gtacgttggtatgcacgtgatttacgttgaggtatggggaaatcaa 733
             ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11218 gtacgttggtatgcacgtgatttacgttgaggtatggggaaatcaa 11173


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,469
Number of Sequences: 1807
Number of extensions: 25469
Number of successful extensions: 5778
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)