BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZH08FM1.SCF screened BAC_end (905 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1781 1225 0.0 >3x_Contig1781 Length = 20717 Score = 1225 bits (618), Expect = 0.0 Identities = 641/646 (99%), Gaps = 2/646 (0%) Strand = Plus / Minus Query: 89 ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11817 ctttgttcaaagttctacaagcgacggtgactgaaataccatcagtagcggacaaaacgt 11758 Query: 149 cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11757 cgacaacaggttgagcaacaaaaccagatccaagaagtaaaactttagacatcgttaata 11698 Query: 209 cgttggttgcgatcacagaaagagtattttcttgaagagatgatgatctgtctattatgg 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11697 cgttggttgcgatcacagaaagagtattttcttgaagagatgatgatctgtctattatgg 11638 Query: 269 caggaaagatagcaggttgcaattctgttacctcaacttatatagtcactatatatatat 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11637 caggaaagatagcaggttgcaattctgttacctcaacttatatagtcactatatatatat 11578 Query: 329 atatatatatattacaaaagtcagtaaatcatcaaatcaacaagagtagtaccagtagta 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11577 atatatatatattacaaaagtcagtaaatcatcaaatcaacaagagtagtaccagtagta 11518 Query: 389 gcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtgc 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11517 gcagctcatcaaaaactcactattcctgctctctgtcgttatccatctcgagcgatgtgc 11458 Query: 449 cattgagatggaattttacaggttccggttcaccaatgtgttttgcgaaattccattgga 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11457 cattgagatggaattttacaggttccggttcaccaatgtgttttgcgaaattccattgga 11398 Query: 509 atttcgacagccgatgtacaatcgaaacggcaaagctagacagccagacagccagacggt 568 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11397 atttcgacagccgaggtacaatcgaaacggcaaagctagacagccagacagccagacggg 11338 Query: 569 gggaccactgggtct-gggacaacccaccatctattagtcattctacaaactgaatgaag 627 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11337 gggaccact-ggtctggggacaacccaccatctattagtcattctacaaactgaatgaag 11279 Query: 628 ctcgatgaggagggaaccgagttccgataaagacttgaagacatgtatgggatagtcagt 687 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 11278 ctcgatgaggagggaactgagttccgataaagacttgaagacatgtatgggatagtcagt 11219 Query: 688 gtacgttggtatgcacgtgatttacgttgaggtatggggaaatcaa 733 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11218 gtacgttggtatgcacgtgatttacgttgaggtatggggaaatcaa 11173 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,469 Number of Sequences: 1807 Number of extensions: 25469 Number of successful extensions: 5778 Number of sequences better than 1.0e-20: 1 length of query: 905 length of database: 10,358,551 effective HSP length: 16 effective length of query: 889 effective length of database: 10,329,639 effective search space: 9183049071 effective search space used: 9183049071 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)