BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH08RM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 856 0.0
>3x_Contig1807
Length = 66587
Score = 856 bits (432), Expect = 0.0
Identities = 626/667 (93%), Gaps = 19/667 (2%)
Strand = Plus / Plus
Query: 46 agcttggcctattaaagcgactattaatgcaaatatggttaaagaaacttgattcctgtg 105
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 36777 agcttggcctattaaagcgacgaataatgcaaatatggttaaagaaacttgattcctgtg 36836
Query: 106 taatgtgttaatgtcacttttttgttcagactcttccttctcaatcttatcgttgtcact 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36837 taatgtgttaatgtcacttttttgttcagactcttccttctcaatcttatcgttgtcact 36896
Query: 166 cgtgtttgtttcatcttgcgtgctgggagtatttaactttgcgaatagttccactcaggt 225
||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 36897 cgtgtctgtttcatcttgcgtgctgggagtatttaactttgcgaatagttttactaagtc 36956
Query: 226 cggcgcaaaaaagcttccagctacacctagcacggcagaaaccataaatgccactccctc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36957 cggcgcaaaaaagcttccagctacacctagcacggcagaaaccataaatgccactccctc 37016
Query: 286 atattctgttttccaacccacatttagagttaagaaaataggcataaagtaaaggacttc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37017 atattctgttttccaacccacatttagagttaagaaaataggcataaagtaaaggacttc 37076
Query: 346 acacatgaaaaacgttgaaagggaacatattccaaagtagaatcaaagatgcaattagtc 405
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 37077 acacatgaaaaacgttgaaa-ggaacatattccaaagtagaatcaaagatgcaattagtc 37135
Query: 406 tgttactaccagcactgaaaaacttcttccaagcgtccagataattcttaggatttctcg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37136 tgttactaccagcactgaaaaacttcttccaagcgtccagataattcttaggatttctcg 37195
Query: 466 cacttttcactggcgggttttccaagac-aacattagaag-acgcagat-agt-aaatga 521
|||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| ||||||
Sbjct: 37196 cacttttcactggcgggttttccaagacaaacataagaagaacgcagataagtaaaatga 37255
Query: 522 t-aagctag-agc-aatgt-ggtgcattgtaagag--tatacga-atcctctgactg-ga 573
| ||||||| ||| ||||| ||||||||||||||| |||||| |||||||||||| |
Sbjct: 37256 taaagctagaagcaaatgtgggtgcattgtaagaggtaatacgatatcctctgactgtaa 37315
Query: 574 aatcgc-ttatgcaaagag-atagccact-attgtgctaacgccttac-ttttccagcag 629
|||||| | |||||||||| ||||||||| |||||||||||||| ||| | | |||||||
Sbjct: 37316 aatcgcataatgcaaagagaatagccactaattgtgctaacgccatacatataccagcag 37375
Query: 630 a-gtaccataaatggag-ataatttgaagatcgctgttctatccctggctatagcgggaa 687
| |||| |||||| ||| ||||||||||||||| |||||||||| || |||||||| ||
Sbjct: 37376 atgtacgataaattgagaataatttgaagatcgttgttctatccttgcttatagcggtaa 37435
Query: 688 tgtaact 694
|||||||
Sbjct: 37436 tgtaact 37442
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5726
Number of Sequences: 1807
Number of extensions: 5726
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)