BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZH10RM1.SCF screened BAC_end (980 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1768 886 0.0 >3x_Contig1768 Length = 25668 Score = 886 bits (447), Expect = 0.0 Identities = 507/523 (96%), Gaps = 3/523 (0%) Strand = Plus / Minus Query: 48 gcttgaggatatattcatccaatgtatcattcccatcatccaaatcatccttgctgttgt 107 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 24682 gcttgtggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgt 24623 Query: 108 cttttgtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtgg 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24622 cttttgtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtgg 24563 Query: 168 aattttcatcactcagattcactatcacttcccccaaaagcaggacgttttctctaatac 227 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 24562 aattttcatca-tcagattcactatcacttcccccaaaagcaggacgttttctcgaacac 24504 Query: 228 tgtccccttcgtttgttcctgtccctatccgcagactttatactggtaagtcttatatcc 287 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 24503 tgtccccttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatcc 24444 Query: 288 ttttgcttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagt 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24443 ttttgcttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagt 24384 Query: 348 ctctcttccttagcatctacagaaacagatgctgtaacatcattattcagtttctgtttt 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24383 ctctcttccttagcatctacagaaacagatgctgtaacatcattattcagtttctgtttt 24324 Query: 408 ttccacttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctc 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24323 ttccacttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctc 24264 Query: 468 accttcgtaatttaactgggtctttttgccttctttctgtgtgctatctttcaggtatta 527 ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 24263 accttcgtaatttaattgggtcttttt-tcttctttctgtgtgctatctttcaagtatta 24205 Query: 528 atcctgaatgggtttaaagggttgggtaattcaatattttagg 570 ||||||||| ||||| |||| || | |||||||||||| |||| Sbjct: 24204 atcctgaat-ggttttaaggttttgttaattcaatattatagg 24163 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9718 Number of Sequences: 1807 Number of extensions: 9718 Number of successful extensions: 264 Number of sequences better than 1.0e-20: 1 length of query: 980 length of database: 10,358,551 effective HSP length: 16 effective length of query: 964 effective length of database: 10,329,639 effective search space: 9957771996 effective search space used: 9957771996 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)