BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH11FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1145 965 0.0
>3x_Contig1145
Length = 5226
Score = 965 bits (487), Expect = 0.0
Identities = 555/574 (96%), Gaps = 3/574 (0%)
Strand = Plus / Minus
Query: 86 atctacatgtcagaaccagtgatggagaatatggcacctgaagatgtggtaaaacttgag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4263 atctacatgtcagaaccagtgatggagaatatggcacctgaagatgtggtaaaacttgag 4204
Query: 146 aaagaagaacatattgtaccggatattggcgtctcttcgatttctaccactgaacccctg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4203 aaagaagaacatattgtaccggatattggcgtctcttcgatttctaccactgaacccctg 4144
Query: 206 tctccatcgggtataccaagggaatcatctggaactgttacctctgcaactgcagctaca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4143 tctccatcgggtataccaagggaatcatctggaactgttacctctgcaactgcagctaca 4084
Query: 266 acagaaagagaagtatcacccaagaaggaactacaaattgatcatgatcgtgttgatcca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4083 acagaaagagaagtatcacccaagaaggaactacaaattgatcatgatcgtgttgatcca 4024
Query: 326 gtagcgatgatcggtgggtcaaccactagaagatatttgaatgaacatgtaacaaaacat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4023 gtagcgatgatcggtgggtcaaccactagaagatatttgaatgaacatgtaacaaaacat 3964
Query: 386 ttattggaaggaatgaaactgatagccagagaaaagcccgaggatccacttcgagtatta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3963 ttattggaaggaatgaaactgatagccagagaaaagcccgaggatccacttcgagtatta 3904
Query: 446 tgccagttcttgattgatgcaagcgaaatgaaccagaagccttcatcgtagatatgaatt 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3903 ggccagttcttgattgatgcaagcgaaatgaaccagaagccttcatcgtagatatgaatt 3844
Query: 506 tacgactttcttaaactaaagacatctgnattattattaatattttatatatggatggtt 565
|||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||
Sbjct: 3843 tacgactttcttaaactaaagacatctgtattattattattattttatatatgtatgttt 3784
Query: 566 tccctc-atgtccagttcac-tattgatttcttcatgaactaaaacttcttctttttcag 623
||| || ||||||||||||| ||| ||| ||| ||||||||||||||||| || || ||
Sbjct: 3783 tccttcaatgtccagttcacttatagatatctacatgaactaaaacttctcctcttcgag 3724
Query: 624 aatttctgaaggcctattttaaaatcttcaaacc 657
|||||||| ||| || |||||||||||||||||
Sbjct: 3723 tatttctgatggctta-tttaaaatcttcaaacc 3691
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9105
Number of Sequences: 1807
Number of extensions: 9105
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)