BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC40ZH11RM1.SCF screened BAC_end (917 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1509 904 0.0 >3x_Contig1509 Length = 8584 Score = 904 bits (456), Expect = 0.0 Identities = 576/612 (94%), Gaps = 3/612 (0%) Strand = Plus / Plus Query: 65 gggtaactgcactggtatggccactattacctttaagaacgcaga-caagctaacttagc 123 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1483 gggtaactccactggtatggccactattacctttaagaacgcagaacaagctaacttagc 1542 Query: 124 tgtaaagaatttccacagcgcaccatttgatggtggtaaatccatattgagattgacgct 183 ||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||||| | Sbjct: 1543 tgtaaagaaattccacaacgcaccaattgatggtggtaaatccaaattgagattgacgtt 1602 Query: 184 gattgtctatccaagcataaagacattatctgatttaatccgccctgtacagaatgctca 243 ||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||| Sbjct: 1603 gattgtcgatccaagcagaaagacattattggacagaatccgccctgtacagaatgctca 1662 Query: 244 ggctgccgggccaaacaaga-ggcagctccaacaaagcctcaacctaagaataaaccagc 302 |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct: 1663 ggctgccgcgccaaacaagaaggcagctccaacaaagcctcaacctaagaagaaaccagc 1722 Query: 303 cggtccaaacaagaaagccattgctgctaaccataagaaaagagctaagccagaaaagaa 362 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1723 cggtccaaacaagaaagccattgctgctaagcaaaagaaaagagctaagccagaaaagaa 1782 Query: 363 gtctttggaagacttagacaaggaaatggctgactattttgaagaatccaaataagatat 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1783 gtctttggaagacttagacaaggaaatggctgactattttgaagaatccaaataagatat 1842 Query: 423 tgcgttcttgaaattactggactgagaaattataaagtcttccttaataacgaacggatt 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1843 tgcgttcttgaaattactggactgagaaattataaagtcttccttaataacgaacggatt 1902 Query: 483 gtctctgctttcgaatctattcgttagacatcctataagctcacttcattcgttagttgc 542 ||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||| ||| Sbjct: 1903 gtctctgctttcgaatctattcgttagacatcctagaagttcagttcatttgttgtttgt 1962 Query: 543 tttatattcctcaattgcaaccggtgtgactgcgtggctgctcaatc-aaaaaatccgta 601 |||||||||||||||| |||||||||||||||||||| | ||||||| |||||||||||| Sbjct: 1963 tttatattcctcaatttcaaccggtgtgactgcgtggtttctcaatcaaaaaaatccgta 2022 Query: 602 tcttttctatgtgctcggcctatcttttcttaccgagctaaactgtattataatattgat 661 ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct: 2023 tctttcttatgtgctcggcctatcttttcttacctagctaaactttattataatattgat 2082 Query: 662 ttcaatactttg 673 |||||| |||| Sbjct: 2083 atcaatagtttg 2094 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7167 Number of Sequences: 1807 Number of extensions: 7167 Number of successful extensions: 41 Number of sequences better than 1.0e-20: 1 length of query: 917 length of database: 10,358,551 effective HSP length: 16 effective length of query: 901 effective length of database: 10,329,639 effective search space: 9307004739 effective search space used: 9307004739 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)