BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC40ZH12FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1030 1209 0.0
>3x_Contig1030
Length = 5200
Score = 1209 bits (610), Expect = 0.0
Identities = 713/741 (96%), Gaps = 5/741 (0%)
Strand = Plus / Plus
Query: 86 ctttgcgtcattggcgtaatctgctgttttgatctcgtcaccttctgaagatgatgaatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 ctttgcgtcattggcgtaatctgctgttttgatctcgtcaccttctgaagatgatgaatt 1399
Query: 146 cttcactctgtcaacttctcccgcaaaggctctgatagttggatatttgaagattgttcc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 cttcactctgtcaacttctcccgcaaaggctctgatagttggatatttgaagattgttcc 1459
Query: 206 tagaggaagctcgacttccaatgtgcttctcaatccgaaaatcattctggtagcaagaat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1460 tagaggaagctcgacttccaatgtgcttctcaatccgaaaatcattctggtagcaagaat 1519
Query: 266 agagtgaccgccaaggtcaaagaaagagtcttctggagaaattgtggcgggtctggaagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1520 agagtgaccgccaaggtcaaagaaagagtcttctggagaaattgtggcgggtctggaagg 1579
Query: 326 taagacacctaaccaaaggtctctaacctccctttcagtttcagtgaactctgagtcgtc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 taagacacctaaccaaaggtctctaacctccctttcagtttcagtgaactctgagtcgtc 1639
Query: 386 tatctcgacagaagaattttccgcaacgagatttatttgtttagcagttgggaattgtaa 445
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1640 tatctcgacagaagaattttccgcaacgagatttagttgtttagcagttgggaattgtaa 1699
Query: 446 cttgggtttgtcaaccttaccatttggattcaatggtagtttatctaatacaacaatcac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1700 cttgggtttgtcaaccttaccatttggattcaatggtagtttatctaatacaacaatcac 1759
Query: 506 tgttggaatggcatagtttgctaatctctttttc-aaaattccttaatttccttaactaa 564
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1760 tgttggaatggcatagtttgctaatctctttttcaaaaattccttaatttccttaactaa 1819
Query: 565 atgacgataaccaatcaaaccgcngacaactggatcctttagatactatttctggaactt 624
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 1820 atgacgataaccaatcaaaccgcggacaactggatcc-ttagatactatttctggaactt 1878
Query: 625 tcgatgatagttttgatagctcttctggtttatcaaatcttgccaccatgaatgtattc- 683
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 1879 ccgatgatagttttgatagctcttctggtttatcaaatcttggcaccatgaatgtaatca 1938
Query: 684 aagtcttttcgccatcgccgttggtacaaactaatgtgatgttttcacggacaa-aagat 742
||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | |||
Sbjct: 1939 aagtcttttcgccatcgccgttgttacgaactaatgtgatgttttcacggacaagaggat 1998
Query: 743 tctgggagattttggtggtcatttcccctatttcatttttgaaacct-ttattttaactt 801
||||||||| | |||| |||||||||| |||| || |||||||| | || |||||||
Sbjct: 1999 actgggagatatgggtgtcgatttcccctaattcaattctgaaacctctaatcttaactt 2058
Query: 802 ggtcattagcccggccccaac 822
| |||| ||| ||||| ||||
Sbjct: 2059 gatcatcagcacggccacaac 2079
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,593
Number of Sequences: 1807
Number of extensions: 13593
Number of successful extensions: 234
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)