BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA01FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1030 1253 0.0
>3x_Contig1030
Length = 5200
Score = 1253 bits (632), Expect = 0.0
Identities = 758/790 (95%), Gaps = 9/790 (1%)
Strand = Plus / Minus
Query: 87 tcgctgatcctgaatctttatcggctaagaaaaatataaacgtatttgtaacaggtgtta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 tcgctgatcctgaatctttatcggctaagaaaaatataaacgtatttgtaacaggtgtta 1231
Query: 147 ctggattcttgggatcctacatcctagcagacctcctcaatcgcccgacctcttcctaca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 ctggattcttgggatcctacatcctagcagacctcctcaatcgcccgacctcttcctaca 1171
Query: 207 atattaaggtttttgcccatgtcagagctaaaactgaggctgctggttttaacaggttaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 atattaaggtttttgcccatgtcagagctaaaactgaggctgctggttttaacaggttaa 1111
Query: 267 aacaagctggtataacttatggtacttggtcagattctttcataaatagaattgaggttg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 aacaagctggtataacttatggtacttggtcagattctttcataaatagaattgaggttg 1051
Query: 327 tgttaggtgacctttctaaggagaagttcggtttgccagaaggcacttggagcaacttgg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 tgttaggtgacctttctaaggagaagttcggtttgccagaaggcacttggagcaacttgg 991
Query: 387 tcaacgaaattgacgttatcattcacaacggtgccttggttcattgggtatatccgtact 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 tcaacgaaattgacgttatcattcacaacggtgccttggttcattgggtatatccgtact 931
Query: 447 caaagctcagagaccctaatgttgttgcaactgtcaatgttatgtctcttgccgcttcag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 caaagctcagagaccctaatgttgttgcaactgtcaatgttatgtctcttgccgcttcag 871
Query: 507 gtaaggccaaatactttacgtttgtttcctctacttccacaattgataccgaacattact 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gtaaggccaaatactttacgtttgtttcctctacttccacaattgataccgaacattact 811
Query: 567 tttcattatctgataagttagtgtcggagggaaagtctggtatcctagaagctgacgact 626
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 810 tttcattatctgataagttagtgtcggagggaaagtctggtatcctagaagct-acgact 752
Query: 627 tatcangatctgctgtcggggttactagtggatatggtcaatctaaatgggcccgccga- 685
||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct: 751 tatcaggatctgctgtcgggttaactagtggatatggtcaatctaaatggg-ccgccgaa 693
Query: 686 -ttatcataagaagagcgggggaccgtggtcttcgcggctgcattggtagaccaggttat 744
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 692 tatatcataagaagagcgggggagcgtggtcttcgcggctgcattgttagaccaggttat 633
Query: 745 tgta-cggtgcctcattccatgggtcggcc-atactgaggatttcttggtaagatcctta 802
|| ||||||||||| | |||||||| || ||||||| ||||||||| |||||| ||||
Sbjct: 632 gttaccggtgcctcatccaatgggtcgtccaatactgatgatttcttgttaagattctta 573
Query: 803 agggggtgggcacatttgggtcaaatccttaac-tgagcaa-acagttaatttgggacct 860
| |||| || ||| ||||||||||||| |||| | ||||| ||||||||| ||| ||||
Sbjct: 572 aagggggtggtacagttgggtcaaatccctaacatcagcaacacagttaatatggtacct 513
Query: 861 ggttgatcat 870
|||||||||
Sbjct: 512 -gttgatcat 504
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4730
Number of Sequences: 1807
Number of extensions: 4730
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)