BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA01RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1423 0.0
>3x_Contig1697
Length = 16220
Score = 1423 bits (718), Expect = 0.0
Identities = 817/839 (97%), Gaps = 9/839 (1%)
Strand = Plus / Minus
Query: 49 aattgttacctgacttagtacttcttcttggagaagaggcagctgacgtagagtaggaag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15374 aattgttacctgacttagtacttcttcttggagaagaggcagctgacgtagagtaggaag 15315
Query: 109 tcggcgaagtataaacactctgctgtgaacttctagaggtaggtttcccttgacttaaat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15314 tcggcgaagtataaacactctgctgtgaacttctagaggtaggtttcccttgacttaaat 15255
Query: 169 tagtcaacgaagaaggtcgtcttaattcctgttcgctagcagtatcgttatccgattgca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15254 tagtcaacgaagaaggtcgtcttaattcctgttcgctagcagtatcgttatccgattgca 15195
Query: 229 tatcgtttgggaaactaaagttcctcattcttatagctgcagtattattatttcccaact 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15194 tatcgtttgggaaactaaagttcctcattcttatagctgcagtattattatttcccaact 15135
Query: 289 tgattgcaggtcgaagaacgttttcagaactgctttgtagcagggtgtgttgtgctggcg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15134 tgattgcaggtcgaagaacgttttcagaactgctttgtagcagggtgtgttgtgctggcg 15075
Query: 349 atcccttgatcatgtgccttctcgggaaatgtgcttttgataatgatcgtggcgacacag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15074 atcccttgatcatgtgccttctcgggaaatgtgcttttgataatgatcgtggcgacacag 15015
Query: 409 aattccccgtaagaaattttgatctgtcaccttcatcatcaaaattcatctcataattgt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15014 aattccccgtaagaaattttgatctgtcaccttcatcatcaaaattcatctcataattgt 14955
Query: 469 tgagaaacaactcggcagtacgagggttaccaaattcttgagtcattgttgaaaaggaaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14954 tgagaaacaactcggcagtacgagggttaccaaattcttgagtcattgttgaaaaggaaa 14895
Query: 529 aatactatacacaagtgcgaatgagttaatggcagtggaagggatatattgtgattngaa 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 14894 aatactatacacaagtgcgaatgagttaatggcagtggaagggatatattgtgattgaaa 14835
Query: 589 t-attgattcgaaa-ttcattcgactgaatt-aaaccatatcccatccttattcctggtg 645
| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14834 taattgattcgaaatttcattcgactgaattcaaaccatatcccatccttattcctggtg 14775
Query: 646 atatatatacgaataaanattatttg-aattagcgatgagcatggtcaagaagaataata 704
||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 14774 atatatatacgaataaaatttaattgaaattagcgatgagcatggtcaagaagaataata 14715
Query: 705 agtatatcatgtaatanaatcatcagatcaagtctttgcagacagaggagaaagtgtcga 764
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14714 agtatatcatgtaataaaatcatcagatcaagtctttgcagacagaggagaaagtgtcga 14655
Query: 765 ttaatcagattagttgtgccgtncccctctgggacccttgcg-ctcttgattcttggaga 823
| |||||||||||||||||||| |||||||||||||| |||| |||| || |||| |||
Sbjct: 14654 taaatcagattagttgtgccgt-cccctctgggaccc-tgcgcctctgaatacttgaaga 14597
Query: 824 aactgggctacagaatcgggtttatagtgtcccgttatccaatagccagacacattctg 882
||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 14596 aactgtgctacagaatc-ggtttatagtgtcccg-tatccaatagcaagacacattctg 14540
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6384
Number of Sequences: 1807
Number of extensions: 6384
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)