BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZA02FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1185 999 0.0
>3x_Contig1185
Length = 4803
Score = 999 bits (504), Expect = 0.0
Identities = 651/683 (95%), Gaps = 13/683 (1%)
Strand = Plus / Plus
Query: 96 tttttttaacgcttctttatttaatttcctttcattaactcttttcagtgccttcatgat 155
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 ttttttcaacgcttctttatttaatttcctttcattaactcttttcagtgccttcatgat 2502
Query: 156 ctcaaggaaattatgatgcttactggataagattttctcctcagacacttcaaatgctct 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 ctcaaggaaattatgatgcttactggataagattttctcctcagacacttcaaatgctct 2562
Query: 216 gttaataatctccgtgggaatatttgatagtttcgctacattaaaaccgtaagaattatg 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 gttaataatctccgtgggaatatttgatagtttcgctacattaaaaccgtaagaattatg 2622
Query: 276 agcctgacccagtaccaacttgtagaggaaaataacgttggtccatttttcacctggttg 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2623 agcctgacccagtaccaacttgtagaggaaaataacgttggtccatttttcacctggttg 2682
Query: 336 gtgtttctctatgtaactcatatggtagtttgctattaatttagagtcgatttggcacaa 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2683 gtgtttctctatgtaactcatatggtagtttgctattaatttagagtcgatttggcacaa 2742
Query: 396 agcagagtagtgagtaataaacaacaccaagggacaattgtcagccaggtaaacaaaata 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 agcagagtagtgagtaataaacaacaccaagggacaattgtcagccaggtaaacaaaata 2802
Query: 456 gttcaaaatggcaaaagatatacttaacccatcatgcgtacctgttnctctttc-acttc 514
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct: 2803 gttcaaaatggcaaaagatatacttaacccatcatgcgtacctgttcctcttccaacttc 2862
Query: 515 gtctagcaatagcagagatcttggcgtcgatgagtttagattatgtaagaactcagacat 574
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 2863 gtctagcaatagcagagatcttggcgtcgatgagtttagaatatgtaagacctcagacat 2922
Query: 575 ctccacctgaaaaagttga-ttagcatttcagt-aatcattgtgtgaaccaattctgg-g 631
||||||||| ||||||||| |||||| |||||| |||||| ||||||||||||||||| |
Sbjct: 2923 ctccacctg-aaaagttgatttagca-ttcagtaaatcatcgtgtgaaccaattctggtg 2980
Query: 632 aattttcgatcacat-ttgacttttca-cag-atctgcagggatgt-acagccattttgg 687
||| | ||||||||| | ||| ||||| ||| |||||||||||||| ||||||| ||||
Sbjct: 2981 aatatccgatcacatatcgacatttcagcagaatctgcagggatgtaacagccaatttgt 3040
Query: 688 gt-attatt-ccagcaatgctacttggctaatttaa-aagatttaccccccattttgggg 744
|| |||||| |||||||||||||||| ||||| ||| | |||||||||||||| || |||
Sbjct: 3041 gtcattattaccagcaatgctacttgtctaatataagaggatttaccccccatatttggg 3100
Query: 745 cctgtttttatgtttattttacc 767
|||||| | ||||||||||||||
Sbjct: 3101 cctgttatgatgtttattttacc 3123
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6494
Number of Sequences: 1807
Number of extensions: 6494
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)